Gm30143 Gene Detail

Summary

• Symbol
  Gm30143
• Name
  predicted gene, 30143

• Feature Type
  lncRNA gene
• IDs
  MGI:5589302
  NCBI Gene: 102631938
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:173861024-173863721 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589302	lncRNA gene	Chr2:173861013-173863841 (+)
129S1/SvImJ	ENSMUSG00200040841	lncRNA gene	Chr2:170798045-170800810 (+)
A/J	ENSMUSG00195026089	lncRNA gene	Chr2:171126603-171129368 (+)
AKR/J	ENSMUSG00220035263	lncRNA gene	Chr2:170420924-170423677 (+)
BALB/cJ	ENSMUSG00180039582	lncRNA gene	Chr2:170559568-170562323 (+)
C3H/HeJ	ENSMUSG00175046149	lncRNA gene	Chr2:171331640-171334409 (+)
C57BL/6NJ	ENSMUSG00215030197	lncRNA gene	Chr2:170758861-170761629 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009326	lncRNA gene	Chr2:169663313-169666071 (+)
CBA/J	ENSMUSG00210043077	lncRNA gene	Chr2:171241629-171244382 (+)
DBA/2J	ENSMUSG00185026063	lncRNA gene	Chr2:170955464-170958230 (+)
FVB/NJ	ENSMUSG00205027072	lncRNA gene	Chr2:170011956-170014709 (+)
JF1/MsJ	ENSUMUG00000049084	lncRNA gene	Chr2:170647118-170649918 (+)
LP/J	ENSMUSG00230013336	lncRNA gene	Chr2:172534338-172537103 (+)
NOD/ShiLtJ	ENSMUSG00190044081	lncRNA gene	Chr2:170638779-170641532 (+)
NZO/HlLtJ	ENSMUSG00225004087	lncRNA gene	Chr2:180526454-180529207 (+)
PWK/PhJ	ENSLUMG00010039334	lncRNA gene	Chr2:170538891-170541679 (+)
SPRET/EiJ	ENSMSPG00010032016	lncRNA gene	Chr2:173325044-173327816 (+)
WSB/EiJ	ENSIUOG00005025481	lncRNA gene	Chr2:170381627-170384388 (+)

Homology

• Gene Tree
  Gm30143
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000120177 (Evidence)
• NCBI Gene
  102631938

Representative Sequences			Length	Strain/Species
genomic	102631938	NCBI Gene Model | MGI Sequence Detail	2698	C57BL/6J
transcript	XR_375369	RefSeq | MGI Sequence Detail	332	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm30143:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22076	Chr2:173861048-173861063 (+)	32 bp