Gm30117 Gene Detail

Summary

• Symbol
  Gm30117
• Name
  predicted gene, 30117

• Feature Type
  lncRNA gene
• IDs
  MGI:5589276
  NCBI Gene: 102631899
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:86169603-86236147 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589276	lncRNA gene	Chr17:86168793-86236147 (-)
129S1/SvImJ	ENSMUSG00200022929	lncRNA gene	Chr17:81572847-81639333 (-)
A/J	ENSMUSG00195029712	lncRNA gene	Chr17:82951279-83019633 (-)
AKR/J	ENSMUSG00220016535	lncRNA gene	Chr17:81901561-81969443 (-)
BALB/cJ	ENSMUSG00180028463	lncRNA gene	Chr17:82623461-82691820 (-)
C3H/HeJ	ENSMUSG00175007113	lncRNA gene	Chr17:81889379-81957734 (-)
C57BL/6NJ	ENSMUSG00215023323	lncRNA gene	Chr17:81612184-81678671 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011838	lncRNA gene	Chr17:82443221-82510320 (-)
CBA/J	ENSMUSG00210022446	lncRNA gene	Chr17:81748167-81816521 (-)
DBA/2J	ENSMUSG00185021090	lncRNA gene	Chr17:84558619-84625073 (-)
FVB/NJ	ENSMUSG00205006383	lncRNA gene	Chr17:82370943-82439317 (-)
JF1/MsJ	ENSUMUG00000017312	lncRNA gene	Chr17:84292336-84359014 (-)
LP/J	ENSMUSG00230010926	lncRNA gene	Chr17:85595988-85664339 (-)
NOD/ShiLtJ	ENSMUSG00190009705	lncRNA gene	Chr17:81646988-81715313 (-)
NZO/HlLtJ	ENSMUSG00225031248	lncRNA gene	Chr17:87853342-87919812 (-)
PWK/PhJ	ENSLUMG00010032956	lncRNA gene	Chr17:81510582-81577062 (-)
SPRET/EiJ	ENSMSPG00010020977	lncRNA gene	Chr17:82095668-82163126 (-)
WSB/EiJ	ENSIUOG00005022659	lncRNA gene	Chr17:82563058-82631394 (-)

Homology

• Gene Tree
  Gm30117
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  5

• Ensembl
  ENSMUSG00000117501 (Evidence)
• NCBI Gene
  102631899

Representative Sequences			Length	Strain/Species
genomic	102631899	NCBI Gene Model | MGI Sequence Detail	66545	C57BL/6J
transcript	KY467795	GenBank | ENA | DDBJ | MGI Sequence Detail	223	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30117:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149724	Chr17:86235991-86236010 (-)	146 bp