Gm30092 Gene Detail

Summary

• Symbol
  Gm30092
• Name
  predicted gene, 30092

• Feature Type
  lncRNA gene
• IDs
  MGI:5589251
  NCBI Gene: 102631866
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:17546446-17636191 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2819 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589251	lncRNA gene	Chr4:17483066-17636375 (-)
129S1/SvImJ	ENSMUSG00200001370	lncRNA gene	Chr4:14235203-14324950 (-)
A/J	ENSMUSG00195017368	lncRNA gene	Chr4:14675476-14765231 (-)
AKR/J	ENSMUSG00220001421	lncRNA gene	Chr4:14431090-14520831 (-)
BALB/cJ	ENSMUSG00180001999	lncRNA gene	Chr4:14186639-14276394 (-)
C3H/HeJ	ENSMUSG00175018800	lncRNA gene	Chr4:14671203-14761347 (-)
C57BL/6NJ	ENSMUSG00215010687	lncRNA gene	Chr4:14312871-14402628 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016647	lncRNA gene	Chr4:14317461-14414427 (-)
CBA/J	ENSMUSG00210001810	lncRNA gene	Chr4:14393420-14483568 (-)
DBA/2J	ENSMUSG00185001357	lncRNA gene	Chr4:14502964-14593111 (-)
FVB/NJ	ENSMUSG00205002033	lncRNA gene	Chr4:14047149-14137308 (-)
JF1/MsJ	ENSUMUG00000002186	lncRNA gene	Chr4:14542017-14620368 (-)
LP/J	ENSMUSG00230001577	lncRNA gene	Chr4:17735632-17825383 (-)
NOD/ShiLtJ	ENSMUSG00190026501	lncRNA gene	Chr4:14375572-14465369 (-)
NZO/HlLtJ	ENSMUSG00225002008	lncRNA gene	Chr4:21767936-21858091 (-)
PWK/PhJ	ENSLUMG00010001933	lncRNA gene	Chr4:14022884-14101238 (-)
SPRET/EiJ	ENSMSPG00010013811	lncRNA gene	Chr4:14521298-14606391 (-)
WSB/EiJ	ENSIUOG00005008641	lncRNA gene	Chr4:14104340-14194185 (-)

Homology

• Gene Tree
  Gm30092
  

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120707 (Evidence)
• NCBI Gene
  102631866

Representative Sequences			Length	Strain/Species
genomic	102631866	NCBI Gene Model | MGI Sequence Detail	89746	C57BL/6J
transcript	NR_168595	RefSeq | MGI Sequence Detail	1149	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30092:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40993	Chr4:17636186-17636192 (-)	2 bp