Gm30085 Gene Detail

Summary

• Symbol
  Gm30085
• Name
  predicted gene, 30085
• Synonyms
  Gm45465

• Feature Type
  lncRNA gene
• IDs
  MGI:5589244
  NCBI Gene: 102631859
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:92899399-92975388 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589244	lncRNA gene	Chr15:92897551-92976756 (+)
129S1/SvImJ	ENSMUSG00200036151	lncRNA gene	Chr15:90049924-90120563 (+)
A/J	ENSMUSG00195020754	lncRNA gene	Chr15:89947112-90017773 (+)
AKR/J	ENSMUSG00220033244	lncRNA gene	Chr15:89984981-90067334 (+)
BALB/cJ	ENSMUSG00180016064	lncRNA gene	Chr15:89827283-89903216 (+)
C3H/HeJ	ENSMUSG00175030308	lncRNA gene	Chr15:90133531-90204193 (+)
C57BL/6NJ	ENSMUSG00215032508	lncRNA gene	Chr15:89935407-90011326 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032153	lncRNA gene	Chr15:89447319-89511873 (+)
CBA/J	ENSMUSG00210013298	lncRNA gene	Chr15:89914923-89985586 (+)
DBA/2J	ENSMUSG00185022562	lncRNA gene	Chr15:89963078-90033733 (+)
FVB/NJ	ENSMUSG00205038090	lncRNA gene	Chr15:89664441-89738263 (+)
JF1/MsJ	ENSUMUG00000044554	lncRNA gene	Chr15:89475678-89536743 (+)
LP/J	ENSMUSG00230041693	lncRNA gene	Chr15:93287906-93358546 (+)
NOD/ShiLtJ	ENSMUSG00190032331	lncRNA gene	Chr15:89957060-90027714 (+)
NZO/HlLtJ	ENSMUSG00225044164	lncRNA gene	Chr15:93584653-93660523 (+)
PWK/PhJ	ENSLUMG00010035670	lncRNA gene	Chr15:89615039-89685686 (+)
SPRET/EiJ	ENSMSPG00010014678	lncRNA gene	Chr15:91425347-91489122 (+)
WSB/EiJ	ENSIUOG00005011364	lncRNA gene	Chr15:90036321-90112249 (+)

Homology

• Gene Tree
  Gm30085
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm30085
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  3

• Ensembl
  ENSMUSG00000109770 (Evidence)
• NCBI Gene
  102631859

Representative Sequences			Length	Strain/Species
genomic	102631859	NCBI Gene Model | MGI Sequence Detail	75990	C57BL/6J
transcript	KY467736	GenBank | ENA | DDBJ | MGI Sequence Detail	363	ZRU/MplStud

Other
Accession IDs

MGI:5791301

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm30085:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132761	Chr15:92900085-92900099 (+)	693 bp