Gm29994 Gene Detail

Summary

• Symbol
  Gm29994
• Name
  predicted gene, 29994

• Feature Type
  lncRNA gene
• IDs
  MGI:5589153
  NCBI Gene: 102631725
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:37960164-37963283 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589153	lncRNA gene	Chr18:37960089-37963283 (-)
129S1/SvImJ	ENSMUSG00200045548	lncRNA gene	Chr18:34961388-34962580 (-)
A/J	ENSMUSG00195038121	lncRNA gene	Chr18:35112066-35113259 (-)
AKR/J	ENSMUSG00220017239	lncRNA gene	Chr18:35082027-35083219 (-)
BALB/cJ	ENSMUSG00180020676	lncRNA gene	Chr18:35561714-35562907 (-)
C3H/HeJ	ENSMUSG00175040004	lncRNA gene	Chr18:35076816-35078007 (-)
C57BL/6NJ	ENSMUSG00215029187	lncRNA gene	Chr18:34831628-34832820 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003066	antisense lncRNA gene	Chr18:35015657-35016833 (-)
CAST/EiJ	ENSTCUG00005024510	lncRNA gene	Chr18:34692257-34693438 (-)
CBA/J	ENSMUSG00210021914	lncRNA gene	Chr18:35103736-35104929 (-)
DBA/2J	ENSMUSG00185020502	lncRNA gene	Chr18:35038350-35039543 (-)
FVB/NJ	ENSMUSG00205038654	lncRNA gene	Chr18:34740325-34741517 (-)
JF1/MsJ	ENSUMUG00000049877	lncRNA gene	Chr18:35172742-35173932 (-)
LP/J	ENSMUSG00230048612	lncRNA gene	Chr18:37155541-37156733 (-)
NOD/ShiLtJ	ENSMUSG00190022964	lncRNA gene	Chr18:34825138-34826329 (-)
NZO/HlLtJ	ENSMUSG00225047357	lncRNA gene	Chr18:37062370-37063562 (-)
PWK/PhJ	ENSLUMG00010012815	lncRNA gene	Chr18:35316292-35317482 (-)
SPRET/EiJ	ENSMSPG00010022707	lncRNA gene	Chr18:35351635-35352808 (-)
WSB/EiJ	ENSIUOG00005008421	lncRNA gene	Chr18:34818183-34819375 (-)

Homology

• Gene Tree
  Gm29994
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm29994
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000102713 (Evidence)
• NCBI Gene
  102631725

Representative Sequences			Length	Strain/Species
genomic	102631725	NCBI Gene Model | MGI Sequence Detail	3120	C57BL/6J
transcript	BC064087	GenBank | ENA | DDBJ | MGI Sequence Detail	1209	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)

TSS for Gm29994:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152991	Chr18:37963143-37963155 (-)	134 bp