Gm29904 Gene Detail

Summary

• Symbol
  Gm29904
• Name
  predicted gene, 29904

• Feature Type
  lncRNA gene
• IDs
  MGI:5589063
  NCBI Gene: 102631607
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:61160284-61265671 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3390 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589063	lncRNA gene	Chr15:61160284-61265690 (+)
129S1/SvImJ	ENSMUSG00200031756	lncRNA gene	Chr15:58169739-58277386 (+)
A/J	ENSMUSG00195006600	lncRNA gene	Chr15:58220144-58325534 (+)
AKR/J	ENSMUSG00220021535	lncRNA gene	Chr15:58201325-58306721 (+)
BALB/cJ	ENSMUSG00180009513	lncRNA gene	Chr15:58132576-58240213 (+)
C3H/HeJ	ENSMUSG00175005117	lncRNA gene	Chr15:58412528-58525674 (+)
C57BL/6NJ	ENSMUSG00215012925	lncRNA gene	Chr15:58141209-58246588 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006939	lncRNA gene	Chr15:57961770-58070384 (+)
CBA/J	ENSMUSG00210007226	lncRNA gene	Chr15:58244249-58357414 (+)
DBA/2J	ENSMUSG00185028000	lncRNA gene	Chr15:58189915-58295290 (+)
FVB/NJ	ENSMUSG00205006728	lncRNA gene	Chr15:57946392-58051753 (+)
JF1/MsJ	ENSUMUG00000033494	lncRNA gene	Chr15:57938526-58059597 (+)
LP/J	ENSMUSG00230008524	lncRNA gene	Chr15:61517012-61624666 (+)
NOD/ShiLtJ	ENSMUSG00190018039	lncRNA gene	Chr15:58211200-58318805 (+)
NZO/HlLtJ	ENSMUSG00225027255	lncRNA gene	Chr15:61798455-61903822 (+)
PWK/PhJ	ENSLUMG00010030979	lncRNA gene	Chr15:58229416-58350506 (+)
SPRET/EiJ	ENSMSPG00010027649	lncRNA gene	Chr15:59513397-59645252 (+)
WSB/EiJ	ENSIUOG00005006570	lncRNA gene	Chr15:58264727-58369984 (+)

Homology

• Gene Tree
  Gm29904
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  3
• Radiation induced
  1
• Transposon induced
  1
• Genomic Mutations
  5 involving Gm29904
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000116299 (Evidence)
• NCBI Gene
  102631607

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116299	Ensembl Gene Model | MGI Sequence Detail	105388	C57BL/6J
transcript	ENSMUST00000230678	Ensembl | MGI Sequence Detail	1086	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 12
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:212391 Uslu VV, et al., Long-range enhancers regulating Myc expression are required for normal facial morphogenesis. Nat Genet. 2014 Jul;46(7):753-8

TSS for Gm29904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131404	Chr15:61261484-61261485 (+)	101,201 bp