Gm29808 Pseudogene Detail

Summary

• Symbol
  Gm29808
• Name
  predicted gene, 29808

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5588967
  NCBI Gene: 101056241
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:80908301-80908768 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588967	pseudogene	Chr3:80898862-80909744 (+)
129S1/SvImJ	ENSMUSG00200019240	pseudogene	Chr3:77755111-77755578 (+)
A/J	ENSMUSG00195012110	pseudogene	Chr3:77762396-77762863 (+)
AKR/J	ENSMUSG00220001494	pseudogene	Chr3:77795443-77795910 (+)
BALB/cJ	ENSMUSG00180001947	pseudogene	Chr3:77881509-77881976 (+)
C3H/HeJ	ENSMUSG00175007612	pseudogene	Chr3:77693494-77693961 (+)
C57BL/6NJ	ENSMUSG00215002140	pseudogene	Chr3:78148135-78148602 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037072	pseudogene	Chr10:92621758-92625307 (+)
CAST/EiJ	ENSTCUG00005001873	pseudogene	Chr3:77257813-77258280 (+)
CBA/J	ENSMUSG00210025804	pseudogene	Chr3:77821500-77821967 (+)
DBA/2J	ENSMUSG00185012900	pseudogene	Chr3:77966225-77966692 (+)
FVB/NJ	ENSMUSG00205006396	pseudogene	Chr3:76765843-76766310 (+)
JF1/MsJ	ENSUMUG00000002302	pseudogene	Chr3:77506129-77506596 (+)
LP/J	ENSMUSG00230010059	pseudogene	Chr3:79967579-79968046 (+)
NOD/ShiLtJ	ENSMUSG00190002923	pseudogene	Chr3:78214318-78214785 (+)
NZO/HlLtJ	ENSMUSG00225007913	pseudogene	Chr3:82686862-82687322 (+)
PWK/PhJ	ENSLUMG00010006563	pseudogene	Chr3:77567634-77568101 (+)
SPRET/EiJ	ENSMSPG00010017959	pseudogene	Chr3:78328084-78328551 (+)
WSB/EiJ	ENSIUOG00005003158	pseudogene	Chr3:78199230-78199697 (+)

Homology

• Gene Tree
  Gm29808
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29808
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000103419 (Evidence)
• NCBI Gene
  101056241

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103419	Ensembl Gene Model | MGI Sequence Detail	468	C57BL/6J
transcript	ENSMUST00000194419	Ensembl | MGI Sequence Detail	468	Not Applicable
polypeptide	XP_006502634	RefSeq | MGI Sequence Detail	174	C57BL/6J

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426