Krtap12-24 Gene Detail

Summary

• Symbol
  Krtap12-24
• Name
  keratin associated protein 12-24
• Synonyms
  Gm29802, Gm48180

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5588961
  NCBI Gene: 101056229
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:77570675-77570989 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588961	protein coding gene	Chr10:77570675-77571027 (-)
129S1/SvImJ	ENSMUSG00200051511	pseudogene	Chr10:74248600-74248914 (-)
A/J	ENSMUSG00195050415	pseudogene	Chr10:74585325-74585639 (-)
AKR/J	ENSMUSG00220048866	pseudogene	Chr10:74244908-74245222 (-)
BALB/cJ	ENSMUSG00180052974	pseudogene	Chr10:74599705-74600019 (-)
C3H/HeJ	ENSMUSG00175053011	pseudogene	Chr10:74470857-74471171 (-)
C57BL/6NJ	ENSMUSG00215053535	pseudogene	Chr10:74208602-74208916 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051606	pseudogene	Chr10:74113726-74114040 (-)
CBA/J	ENSMUSG00210049861	pseudogene	Chr10:74327011-74327325 (-)
DBA/2J	ENSMUSG00185054164	pseudogene	Chr10:74669335-74669649 (-)
FVB/NJ	ENSMUSG00205050870	pseudogene	Chr10:74361349-74361663 (-)
JF1/MsJ	ENSUMUG00000055701	pseudogene	Chr10:75838692-75839006 (-)
LP/J	ENSMUSG00230051241	pseudogene	Chr10:76438837-76439151 (-)
NOD/ShiLtJ	ENSMUSG00190051972	pseudogene	Chr10:74646812-74647126 (-)
NZO/HlLtJ	ENSMUSG00225048137	pseudogene	Chr10:80735613-80735927 (-)
PWK/PhJ	ENSLUMG00010052768	pseudogene	Chr10:74226236-74226550 (-)
SPRET/EiJ	ENSMSPG00010047849	pseudogene	Chr10:76031913-76032227 (-)
WSB/EiJ	ENSIUOG00005051403	pseudogene	Chr10:74256594-74256908 (-)

Homology

• Gene Tree
  Krtap12-24
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  2 involving Krtap12-24
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000112236 (Evidence)
• NCBI Gene
  101056229

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112236	Ensembl Gene Model | MGI Sequence Detail	315	C57BL/6J
transcript	ENSMUST00000219191	Ensembl | MGI Sequence Detail	315	Not Applicable
polypeptide	NP_001365450	RefSeq | MGI Sequence Detail	104	C57BL/6

Other
Accession IDs

MGI:6097556, MGI:7593862

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Krtap12-24:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98242	Chr10:77571026-77571029 (-)	-39 bp