Gm29773 Gene Detail

Summary

• Symbol
  Gm29773
• Name
  predicted gene, 29773
• Synonyms
  Gm45891

• Feature Type
  lncRNA gene
• IDs
  MGI:5588932
  NCBI Gene: 101056072
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:124623012-124627359 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588932	lncRNA gene	Chr8:124621515-124629346 (+)
129S1/SvImJ	ENSMUSG00200043488	lncRNA gene	Chr8:118869163-118873508 (+)
A/J	ENSMUSG00195027046	lncRNA gene	Chr8:119172486-119176809 (+)
AKR/J	ENSMUSG00220044326	lncRNA gene	Chr8:119350645-119355002 (+)
BALB/cJ	ENSMUSG00180030422	lncRNA gene	Chr8:119217414-119221739 (+)
C3H/HeJ	ENSMUSG00175032926	lncRNA gene	Chr8:119270156-119274510 (+)
C57BL/6NJ	ENSMUSG00215034757	lncRNA gene	Chr8:118854758-118859108 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035096	lncRNA gene	Chr8:118624197-118628512 (+)
CBA/J	ENSMUSG00210040144	lncRNA gene	Chr8:119180738-119185087 (+)
DBA/2J	ENSMUSG00185037407	lncRNA gene	Chr8:125499637-125503985 (+)
FVB/NJ	ENSMUSG00205038299	lncRNA gene	Chr8:118163234-118167585 (+)
JF1/MsJ	ENSUMUG00000040486	lncRNA gene	Chr8:127724885-127729204 (+)
LP/J	ENSMUSG00230032156	lncRNA gene	Chr8:129051858-129056203 (+)
NOD/ShiLtJ	ENSMUSG00190021306	lncRNA gene	Chr8:119303206-119307554 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010039242	lncRNA gene	Chr8:119012056-119016369 (+)
SPRET/EiJ	ENSMSPG00010042110	lncRNA gene	Chr8:121201280-121205601 (+)
WSB/EiJ	ENSIUOG00005031211	lncRNA gene	Chr8:119988276-119992631 (+)

Homology

• Gene Tree
  Gm29773
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  6

• Ensembl
  ENSMUSG00000110547 (Evidence)
• NCBI Gene
  101056072

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110547	Ensembl Gene Model | MGI Sequence Detail	4348	C57BL/6J
transcript	ENSMUST00000212751	Ensembl | MGI Sequence Detail	1895	Not Applicable

Other
Accession IDs

MGI:5805006

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29773:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80003	Chr8:124622592-124622601 (+)	-415 bp
Tssr80004	Chr8:124622676-124622687 (+)	-330 bp
Tssr80005	Chr8:124622936-124622959 (+)	-64 bp
Tssr80006	Chr8:124622973-124623015 (+)	-18 bp