Gm29767 Pseudogene Detail

Summary

• Symbol
  Gm29767
• Name
  predicted gene, 29767

• Feature Type
  pseudogene
• IDs
  MGI:5588926
  NCBI Gene: 101056052
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:117187270-117187672 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588926	pseudogene	Chr13:117187270-117220774 (+)
129S1/SvImJ	ENSMUSG00200003812	pseudogene	Chr13:111668520-111668922 (+)
A/J	ENSMUSG00195001003	pseudogene	Chr13:112168363-112168765 (+)
AKR/J	ENSMUSG00220033048	pseudogene	Chr13:110602823-110603225 (+)
BALB/cJ	ENSMUSG00180011059	pseudogene	Chr13:112754790-112755192 (+)
C3H/HeJ	ENSMUSG00175002379	pseudogene	Chr13:112845026-112845428 (+)
C57BL/6NJ	ENSMUSG00215000880	pseudogene	Chr13:112850009-112850411 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002632	pseudogene	Chr13:111893398-111893800 (+)
CBA/J	ENSMUSG00210017306	pseudogene	Chr13:112167805-112168207 (+)
DBA/2J	ENSMUSG00185030508	pseudogene	Chr13:115937903-115938305 (+)
FVB/NJ	ENSMUSG00205001333	pseudogene	Chr13:111593240-111593642 (+)
JF1/MsJ	ENSUMUG00000019345	pseudogene	Chr13:115391947-115392349 (+)
LP/J	ENSMUSG00230011568	pseudogene	Chr13:126136189-126136591 (+)
NOD/ShiLtJ	ENSMUSG00190009743	pseudogene	Chr13:112470844-112471246 (+)
NZO/HlLtJ	ENSMUSG00225031032	pseudogene	Chr13:118287254-118287656 (+)
PWK/PhJ	ENSLUMG00010008047	pseudogene	Chr13:111465904-111466306 (+)
SPRET/EiJ	ENSMSPG00010007008	pseudogene	Chr13:113245773-113246350 (+)
WSB/EiJ	ENSIUOG00005013078	pseudogene	Chr13:111626196-111626598 (+)

Homology

• Gene Tree
  Gm29767
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114609 (Evidence)
• NCBI Gene
  101056052

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114609	Ensembl Gene Model | MGI Sequence Detail	403	C57BL/6J
transcript	ENSMUST00000224367	Ensembl | MGI Sequence Detail	403	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm29767:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121212	Chr13:117185261-117185304 (+)	-1,987 bp
Tssr121213	Chr13:117187116-117187142 (+)	-141 bp