Gm29707 Gene Detail

Summary

• Symbol
  Gm29707
• Name
  predicted gene, 29707

• Feature Type
  lncRNA gene
• IDs
  MGI:5588866
  NCBI Gene: 101055666
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:102218070-102221817 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588866	lncRNA gene	Chr5:102218070-102221817 (+)
129S1/SvImJ	ENSMUSG00200007135	lncRNA gene	Chr5:95967848-95971580 (+)
A/J	ENSMUSG00195035827	lncRNA gene	Chr5:95529429-95533162 (+)
AKR/J	ENSMUSG00220038636	lncRNA gene	Chr5:95016214-95019946 (+)
BALB/cJ	ENSMUSG00180036003	lncRNA gene	Chr5:95689908-95693641 (+)
C3H/HeJ	ENSMUSG00175032681	lncRNA gene	Chr5:97790054-97793787 (+)
C57BL/6NJ	ENSMUSG00215023668	lncRNA gene	Chr5:95605550-95609283 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006114	lincRNA gene	Chr5:94990765-94992304 (+)
CAST/EiJ	ENSTCUG00005024843	lncRNA gene	Chr5:94968229-94971901 (+)
CBA/J	ENSMUSG00210035760	lncRNA gene	Chr5:96540371-96544104 (+)
DBA/2J	ENSMUSG00185037656	lncRNA gene	Chr5:99457768-99461501 (+)
FVB/NJ	ENSMUSG00205040387	lncRNA gene	Chr5:95436299-95440032 (+)
JF1/MsJ	ENSUMUG00000018414	lncRNA gene	Chr5:102420848-102424585 (+)
LP/J	ENSMUSG00230033402	lncRNA gene	Chr5:103509385-103513117 (+)
NOD/ShiLtJ	ENSMUSG00190029668	lncRNA gene	Chr5:95440348-95444080 (+)
NZO/HlLtJ	ENSMUSG00225013272	lncRNA gene	Chr5:111275888-111279608 (+)
PWK/PhJ	ENSLUMG00010016155	lncRNA gene	Chr5:94522195-94525913 (+)
SPRET/EiJ	ENSMSPG00010027637	lncRNA gene	Chr5:97438555-97442289 (+)
WSB/EiJ	ENSIUOG00005033306	lncRNA gene	Chr5:98163118-98166850 (+)

Homology

• Gene Tree
  Gm29707
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm29707
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37

• Ensembl
  ENSMUSG00000106492 (Evidence)
• NCBI Gene
  101055666

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106492	Ensembl Gene Model | MGI Sequence Detail	3748	C57BL/6J
transcript	ENSMUST00000245544	Ensembl | MGI Sequence Detail	1828	Not Applicable

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm29707:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47510	Chr5:102217928-102217971 (+)	-120 bp
Tssr47511	Chr5:102218705-102218716 (+)	641 bp