Gm29688 Gene Detail

Summary

• Symbol
  Gm29688
• Name
  predicted gene, 29688

• Feature Type
  lncRNA gene
• IDs
  MGI:5588847
  NCBI Gene: 629746
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:127704791-127706188 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588847	lncRNA gene	Chr8:127699826-127706275 (-)
129S1/SvImJ	ENSMUSG00200005018	lncRNA gene	Chr8:121963279-121964739 (-)
A/J	ENSMUSG00195003807	lncRNA gene	Chr8:122235791-122237260 (-)
AKR/J	ENSMUSG00220001801	lncRNA gene	Chr8:122423654-122425128 (-)
BALB/cJ	ENSMUSG00180000918	lncRNA gene	Chr8:122280517-122281991 (-)
C3H/HeJ	ENSMUSG00175005219	lncRNA gene	Chr8:122357195-122358666 (-)
C57BL/6NJ	ENSMUSG00215000717	lncRNA gene	Chr8:121937934-121939412 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007566	lncRNA gene	Chr8:121694847-121696272 (-)
CBA/J	ENSMUSG00210014122	lncRNA gene	Chr8:122269707-122271188 (-)
DBA/2J	ENSMUSG00185039184	lncRNA gene	Chr8:128588726-128590207 (-)
FVB/NJ	ENSMUSG00205040445	lncRNA gene	Chr8:121237187-121238664 (-)
JF1/MsJ	ENSUMUG00000041067	lncRNA gene	Chr8:130778870-130780314 (-)
LP/J	ENSMUSG00230007477	lncRNA gene	Chr8:132145765-132147225 (-)
NOD/ShiLtJ	ENSMUSG00190006933	lncRNA gene	Chr8:122380611-122382089 (-)
NZO/HlLtJ	ENSMUSG00225020008	lncRNA gene	Chr8:135501109-135502586 (-)
PWK/PhJ	ENSLUMG00010002725	lncRNA gene	Chr8:122070356-122071777 (-)
SPRET/EiJ	ENSMSPG00010001808	lncRNA gene	Chr8:124274701-124275629 (-)
WSB/EiJ	ENSIUOG00005003198	lncRNA gene	Chr8:123047040-123048505 (-)

Homology

• Gene Tree
  Gm29688
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000120645 (Evidence)
• NCBI Gene
  629746

Representative Sequences			Length	Strain/Species
genomic	629746	NCBI Gene Model | MGI Sequence Detail	1398	C57BL/6J
transcript	NR_151744	RefSeq | MGI Sequence Detail	332	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm29688:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83539	Chr8:127706261-127706269 (-)	-77 bp
Tssr83538	Chr8:127706208-127706221 (-)	-27 bp