Gm29683 Gene Detail

Summary

• Symbol
  Gm29683
• Name
  predicted gene, 29683
• Synonyms
  Gm44536

• Feature Type
  lncRNA gene
• IDs
  MGI:5588842
  NCBI Gene: 624549
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:69828616-69987600 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3907 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588842	lncRNA gene	Chr7:69828616-69998560 (-)
129S1/SvImJ	ENSMUSG00200012487	lncRNA gene	Chr7:56575727-56734836 (-)
A/J	ENSMUSG00195013590	lncRNA gene	Chr7:60978131-61137286 (-)
AKR/J	ENSMUSG00220021068	lncRNA gene	Chr7:54482721-54647207 (-)
BALB/cJ	ENSMUSG00180005034	lncRNA gene	Chr7:57687977-57847073 (-)
C3H/HeJ	ENSMUSG00175010933	lncRNA gene	Chr7:58480336-58639460 (-)
C57BL/6NJ	ENSMUSG00215023113	lncRNA gene	Chr7:57606006-57765136 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004280	lncRNA gene	Chr7:61162676-61313936 (-)
CBA/J	ENSMUSG00210019893	lncRNA gene	Chr7:58318775-58477879 (-)
DBA/2J	ENSMUSG00185001184	lncRNA gene	Chr7:62660874-62819980 (-)
FVB/NJ	ENSMUSG00205004875	lncRNA gene	Chr7:58323195-58482953 (-)
JF1/MsJ	ENSUMUG00000011920	lncRNA gene	Chr7:67429440-67580589 (-)
LP/J	ENSMUSG00230021621	lncRNA gene	Chr7:68750062-68909144 (-)
NOD/ShiLtJ	ENSMUSG00190007605	lncRNA gene	Chr7:58427024-58586137 (-)
NZO/HlLtJ	ENSMUSG00225017409	lncRNA gene	Chr7:67027039-67186122 (-)
PWK/PhJ	ENSLUMG00010019307	lncRNA gene	Chr7:56963082-57114428 (-)
SPRET/EiJ	ENSMSPG00010003763	lncRNA gene	Chr7:57295740-57448614 (-)
WSB/EiJ	ENSIUOG00005004769	lncRNA gene	Chr7:58845767-58998433 (-)

Homology

• Gene Tree
  Gm29683
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29683
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  2

• Ensembl
  ENSMUSG00000109097 (Evidence)
• NCBI Gene
  624549

Representative Sequences			Length	Strain/Species
genomic	624549	NCBI Gene Model | MGI Sequence Detail	158985	C57BL/6J
transcript	NR_131144	RefSeq | MGI Sequence Detail	1902	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5753112

References

• Summaries
  All 15

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm29683:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72898	Chr7:69987575-69987625 (-)	0 bp