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Platr1 Gene Detail
Summary
  • Symbol
    Platr1
  • Name
    pluripotency associated transcript 1
  • Synonyms
    Gm29643
Location &
Maps
more
  • Sequence Map
    Chr1:134363366-134375432 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    406 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5580349
 lncRNA gene Chr1:134363366-134375432 (+)
129S1/SvImJ ENSMUSG00200008965
 lncRNA gene Chr1:131962227-131966196 (+)
A/J ENSMUSG00195044731
 lncRNA gene Chr1:131036887-131040858 (+)
AKR/J ENSMUSG00220051184
 lncRNA gene Chr1:130906956-130910925 (+)
BALB/cJ ENSMUSG00180040140
 lncRNA gene Chr1:131590723-131594692 (+)
C3H/HeJ ENSMUSG00175047571
 lncRNA gene Chr1:131281114-131285085 (+)
C57BL/6NJ ENSMUSG00215046528
 lncRNA gene Chr1:131292391-131296360 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004501
 lincRNA gene Chr1:126030513-126033573 (+)
CAST/EiJ ENSTCUG00005039690
 lncRNA gene Chr1:130199704-130203682 (+)
CBA/J ENSMUSG00210028923
 lncRNA gene Chr1:131212566-131216536 (+)
DBA/2J ENSMUSG00185033017
 lncRNA gene Chr1:135573670-135577639 (+)
FVB/NJ ENSMUSG00205044060
 lncRNA gene Chr1:130538957-130542926 (+)
JF1/MsJ ENSUMUG00000052296
 lncRNA gene Chr1:134723917-134727878 (+)
LP/J ENSMUSG00230039489
 lncRNA gene Chr1:135125577-135129546 (+)
NOD/ShiLtJ ENSMUSG00190047715
 lncRNA gene Chr1:131226666-131230636 (+)
NZO/HlLtJ ENSMUSG00225021840
 lncRNA gene Chr1:138876992-138880962 (+)
PWK/PhJ ENSLUMG00010028351
 lncRNA gene Chr1:130349093-130353541 (+)
SPRET/EiJ ENSMSPG00010045308
 lncRNA gene Chr1:133150160-133154162 (+)
WSB/EiJ ENSIUOG00005047632
 lncRNA gene Chr1:130961270-130965239 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    2
  • Gene trapped
    5
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Platr1
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    22
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000101061 Ensembl Gene Model | MGI Sequence Detail 12067 C57BL/6J ±  kb
transcript ENSMUST00000188474 Ensembl | MGI Sequence Detail 3316 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 11
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory