Gm29642 Gene Detail

Summary

• Symbol
  Gm29642
• Name
  predicted gene 29642

• Feature Type
  lncRNA gene
• IDs
  MGI:5580348
  NCBI Gene: 102631685
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:25063322-25156876 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  2599 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580348	lncRNA gene	Chr9:25058716-25156876 (+)
129S1/SvImJ	ENSMUSG00200008251	lncRNA gene	Chr9:22041459-22065037 (+)
A/J	ENSMUSG00195006235	lncRNA gene	Chr9:21857925-21881504 (+)
AKR/J	ENSMUSG00220010886	lncRNA gene	Chr9:21856868-21880448 (+)
BALB/cJ	ENSMUSG00180006782	lncRNA gene	Chr9:21992103-22015683 (+)
C3H/HeJ	ENSMUSG00175020023	lncRNA gene	Chr9:21968577-21992160 (+)
C57BL/6NJ	ENSMUSG00215008758	lncRNA gene	Chr9:21953915-21977496 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006746	lincRNA gene	Chr9:21035576-21057481 (+)
CAST/EiJ	ENSTCUG00005019182	lncRNA gene	Chr9:21958041-21985315 (+)
CBA/J	ENSMUSG00210022212	lncRNA gene	Chr9:22001900-22025439 (+)
DBA/2J	ENSMUSG00185002553	lncRNA gene	Chr9:22050710-22074291 (+)
FVB/NJ	ENSMUSG00205004936	lncRNA gene	Chr9:22326307-22349846 (+)
JF1/MsJ	ENSUMUG00000016842	lncRNA gene	Chr9:22158312-22179493 (+)
LP/J	ENSMUSG00230005332	lncRNA gene	Chr9:22450563-22474142 (+)
NOD/ShiLtJ	ENSMUSG00190006269	lncRNA gene	Chr9:22023316-22046857 (+)
NZO/HlLtJ	ENSMUSG00225015012	lncRNA gene	Chr9:22452953-22476491 (+)
PWK/PhJ	ENSLUMG00010010006	lncRNA gene	Chr9:22044621-22065835 (+)
SPRET/EiJ	ENSMSPG00010002169	lncRNA gene	Chr9:22336861-22360583 (+)
WSB/EiJ	ENSIUOG00005016303	lncRNA gene	Chr9:21522959-21546562 (+)

Homology

• Gene Tree
  Gm29642
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  3

• Ensembl
  ENSMUSG00000100002 (Evidence)
• NCBI Gene
  102631685

Representative Sequences			Length	Strain/Species
genomic	102631685	NCBI Gene Model | MGI Sequence Detail	93555	C57BL/6J
transcript	NR_169024	RefSeq | MGI Sequence Detail	1352	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm29642:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84119	Chr9:25063288-25063331 (+)	-12 bp
Tssr84120	Chr9:25097996-25098007 (+)	34,680 bp
Tssr84121	Chr9:25098024-25098035 (+)	34,708 bp