Gm29571 Gene Detail

Summary

• Symbol
  Gm29571
• Name
  predicted gene 29571

• Feature Type
  lncRNA gene
• IDs
  MGI:5580277
  NCBI Gene: 102640597
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:25412284-25549241 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  4352 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580277	lncRNA gene	Chr10:25412101-25579685 (+)
129S1/SvImJ	ENSMUSG00200010325	lncRNA gene	Chr10:22247025-22409220 (+)
A/J	ENSMUSG00195015010	lncRNA gene	Chr10:22552979-22711449 (+)
AKR/J	ENSMUSG00220011854	lncRNA gene	Chr10:22233387-22391861 (+)
BALB/cJ	ENSMUSG00180019820	lncRNA gene	Chr10:22676241-22840287 (+)
C3H/HeJ	ENSMUSG00175026213	lncRNA gene	Chr10:22350075-22508531 (+)
C57BL/6NJ	ENSMUSG00215014438	lncRNA gene	Chr10:22203596-22370635 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002495	antisense lncRNA gene	Chr10:21523790-21644654 (+)
CAST/EiJ	ENSTCUG00005014551	lncRNA gene	Chr10:21982215-22144797 (+)
CBA/J	ENSMUSG00210023419	lncRNA gene	Chr10:22318455-22485479 (+)
DBA/2J	ENSMUSG00185008144	lncRNA gene	Chr10:22490451-22657483 (+)
FVB/NJ	ENSMUSG00205010326	lncRNA gene	Chr10:22490980-22646980 (+)
JF1/MsJ	ENSUMUG00000020406	lncRNA gene	Chr10:22263413-22425144 (+)
LP/J	ENSMUSG00230012448	lncRNA gene	Chr10:24281562-24443756 (+)
NOD/ShiLtJ	ENSMUSG00190016045	lncRNA gene	Chr10:22625813-22792370 (+)
NZO/HlLtJ	ENSMUSG00225031534	lncRNA gene	Chr10:28537057-28702577 (+)
PWK/PhJ	ENSLUMG00010010839	lncRNA gene	Chr10:22168050-22330296 (+)
SPRET/EiJ	ENSMSPG00010015586	lncRNA gene	Chr10:22907185-23072438 (+)
WSB/EiJ	ENSIUOG00005032060	lncRNA gene	Chr10:21888692-22071332 (+)

Homology

• Gene Tree
  Gm29571
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm29571
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  144
• RefSeq
  1

• Ensembl
  ENSMUSG00000101537 (Evidence)
• NCBI Gene
  102640597

Representative Sequences			Length	Strain/Species
genomic	102640597	NCBI Gene Model | MGI Sequence Detail	136958	C57BL/6J
transcript	NR_136909	RefSeq | MGI Sequence Detail	1909	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 13

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm29571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92785	Chr10:25412263-25412294 (+)	-5 bp