Gm29478 Gene Detail

Summary

• Symbol
  Gm29478
• Name
  predicted gene 29478

• Feature Type
  lncRNA gene
• IDs
  MGI:5580184
  NCBI Gene: 102633433
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:91285546-91489288 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  5232 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580184	lncRNA gene	Chr9:91285522-91549762 (+)
129S1/SvImJ	ENSMUSG00200005770	lncRNA gene	Chr9:88398904-88557297 (+)
A/J	ENSMUSG00195007925	lncRNA gene	Chr9:87666000-87825098 (+)
AKR/J	ENSMUSG00220020384	lncRNA gene	Chr9:88047010-88205385 (+)
BALB/cJ	ENSMUSG00180007162	lncRNA gene	Chr9:87992557-88151639 (+)
C3H/HeJ	ENSMUSG00175004744	lncRNA gene	Chr9:88303981-88463060 (+)
C57BL/6NJ	ENSMUSG00215010438	lncRNA gene	Chr9:88298578-88456946 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006806	lincRNA gene	Chr9:87280565-87448255 (+)
CAST/EiJ	ENSTCUG00005004466	lncRNA gene	Chr9:88234107-88392835 (+)
CBA/J	ENSMUSG00210006051	lncRNA gene	Chr9:88167336-88325702 (+)
DBA/2J	ENSMUSG00185002086	lncRNA gene	Chr9:88341506-88500471 (+)
FVB/NJ	ENSMUSG00205005012	lncRNA gene	Chr9:88497634-88656602 (+)
JF1/MsJ	ENSUMUG00000029883	lncRNA gene	Chr9:88106740-88265424 (+)
LP/J	ENSMUSG00230010473	lncRNA gene	Chr9:88504907-88663273 (+)
NOD/ShiLtJ	ENSMUSG00190011913	lncRNA gene	Chr9:87963636-88121976 (+)
NZO/HlLtJ	ENSMUSG00225016385	lncRNA gene	Chr9:88642333-88801297 (+)
PWK/PhJ	ENSLUMG00010002979	lncRNA gene	Chr9:88054518-88217144 (+)
SPRET/EiJ	ENSMSPG00010002609	lncRNA gene	Chr9:89743665-89915677 (+)
WSB/EiJ	ENSIUOG00005003998	lncRNA gene	Chr9:87392641-87551086 (+)

Homology

• Gene Tree
  Gm29478
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29478
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  11

• Ensembl
  ENSMUSG00000100341 (Evidence)
• NCBI Gene
  102633433

Representative Sequences			Length	Strain/Species
genomic	102633433	NCBI Gene Model | MGI Sequence Detail	203743	C57BL/6J
transcript	XR_871001	RefSeq | MGI Sequence Detail	6477	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm29478:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86487	Chr9:91285518-91285527 (+)	-23 bp
Tssr86488	Chr9:91286553-91286584 (+)	1,023 bp
Tssr86489	Chr9:91319902-91319907 (+)	34,359 bp