Gm29438 Gene Detail

Summary

• Symbol
  Gm29438
• Name
  predicted gene 29438

• Feature Type
  sense intronic lncRNA gene
• IDs
  MGI:5580144
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:72081185-72083797 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580144	sense intronic lncRNA gene	Chr6:72081185-72083797 (+)
129S1/SvImJ	ENSMUSG00200013161	unclassified gene	Chr6:68984687-68987299 (+)
A/J	ENSMUSG00195045680	unclassified gene	Chr6:68746852-68749464 (+)
AKR/J	ENSMUSG00220046727	unclassified gene	Chr6:67716736-67719336 (+)
BALB/cJ	ENSMUSG00180039680	unclassified gene	Chr6:69101844-69104456 (+)
C3H/HeJ	ENSMUSG00175012527	unclassified gene	Chr6:108316779-108319391 (-)
C57BL/6NJ	ENSMUSG00215044158	unclassified gene	Chr6:69074548-69077160 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001695	unclassified gene	Chr6:68970193-68972760 (+)
CAST/EiJ	ENSTCUG00005035678	unclassified gene	Chr6:69233895-69236474 (+)
CBA/J	ENSMUSG00210040816	unclassified gene	Chr6:68931351-68933963 (+)
DBA/2J	ENSMUSG00185046815	unclassified gene	Chr6:69491474-69494086 (+)
FVB/NJ	ENSMUSG00205039990	unclassified gene	Chr6:68197379-68199991 (+)
JF1/MsJ	ENSUMUG00000044673	unclassified gene	Chr6:68532430-68535030 (+)
LP/J	ENSMUSG00230025025	unclassified gene	Chr6:70579720-70582332 (+)
NOD/ShiLtJ	ENSMUSG00190044479	unclassified gene	Chr6:68451993-68454592 (+)
NZO/HlLtJ	ENSMUSG00225006900	unclassified gene	Chr6:72553566-72556178 (+)
PWK/PhJ	ENSLUMG00010023969	unclassified gene	Chr6:67951900-67954495 (+)
SPRET/EiJ	ENSMSPG00010026106	unclassified gene	Chr6:69781670-69784268 (+)
WSB/EiJ	ENSIUOG00005024417	unclassified gene	Chr6:69485862-69488474 (+)

Homology

• Gene Tree
  Gm29438
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm29438
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101823 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101823	Ensembl Gene Model | MGI Sequence Detail	2613	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for Gm29438:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57063	Chr6:72081185-72081190 (+)	3 bp