Tuba5-ps Pseudogene Detail

Summary

• Symbol
  Tuba5-ps
• Name
  tubulin alpha 5, pseudogene
• Synonyms
  Gm29376

• Feature Type
  pseudogene
• IDs
  MGI:5580082
  NCBI Gene: 102634941
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:134447716-134451877 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580082	pseudogene	Chr1:134441166-134455309 (+)
129S1/SvImJ	ENSMUSG00200008953	pseudogene	Chr1:132047457-132051604 (+)
A/J	ENSMUSG00195044703	pseudogene	Chr1:131122057-131126205 (+)
AKR/J	ENSMUSG00220051169	pseudogene	Chr1:130992075-130996227 (+)
BALB/cJ	ENSMUSG00180040067	pseudogene	Chr1:131675092-131679254 (+)
C3H/HeJ	ENSMUSG00175047530	pseudogene	Chr1:131366272-131370420 (+)
C57BL/6NJ	ENSMUSG00215046511	pseudogene	Chr1:131376753-131380914 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037046	pseudogene	Chr1:126115452-126119726 (+)
CAST/EiJ	ENSTCUG00005039677	pseudogene	Chr1:130284540-130288691 (+)
CBA/J	ENSMUSG00210028907	pseudogene	Chr1:131297768-131301914 (+)
DBA/2J	ENSMUSG00185032976	pseudogene	Chr1:135658773-135662924 (+)
FVB/NJ	ENSMUSG00205044125	pseudogene	Chr1:130629369-130633517 (+)
JF1/MsJ	ENSUMUG00000052254	pseudogene	Chr1:134808224-134812385 (+)
LP/J	ENSMUSG00230039242	pseudogene	Chr1:135209920-135214080 (+)
NOD/ShiLtJ	ENSMUSG00190047670	pseudogene	Chr1:131311873-131316019 (+)
NZO/HlLtJ	ENSMUSG00225021617	pseudogene	Chr1:138962150-138966298 (+)
PWK/PhJ	ENSLUMG00010028302	pseudogene	Chr1:130433605-130437767 (+)
SPRET/EiJ	ENSMSPG00010045285	pseudogene	Chr1:133232827-133236869 (+)
WSB/EiJ	ENSIUOG00005047615	pseudogene	Chr1:131046255-131050404 (+)

Homology

• MGI Vertebrate Homology
  Tuba5-ps stringent orthology
  1 mouse;1 zebrafish
  
• Gene Tree
  Tuba5-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Tuba5-ps
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  Xenbase tuba5
  ZFIN tuba5

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000101955 (Evidence)
• NCBI Gene
  102634941

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101955	Ensembl Gene Model | MGI Sequence Detail	4162	C57BL/6J
transcript	ENSMUST00000189357	Ensembl | MGI Sequence Detail	835	Not Applicable

Other
Accession IDs

MGI:6407388

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45