Gm29283 Gene Detail

Summary

• Symbol
  Gm29283
• Name
  predicted gene 29283

• Feature Type
  lncRNA gene
• IDs
  MGI:5579989
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:13139045-13175975 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  1445 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579989	lncRNA gene	Chr1:13139045-13175975 (+)
129S1/SvImJ	ENSMUSG00200018875	lncRNA gene	Chr1:10464330-10474146 (+)
A/J	ENSMUSG00195027543	lncRNA gene	Chr1:10291597-10301407 (+)
AKR/J	ENSMUSG00220008512	lncRNA gene	Chr1:10362129-10371938 (+)
BALB/cJ	ENSMUSG00180025350	lncRNA gene	Chr1:10357930-10367744 (+)
C3H/HeJ	ENSMUSG00175000419	lncRNA gene	Chr1:10286725-10296539 (+)
C57BL/6NJ	ENSMUSG00215014058	lncRNA gene	Chr1:10334290-10344115 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022165	lncRNA gene	Chr1:10740850-10750059 (+)
CBA/J	ENSMUSG00210003048	lncRNA gene	Chr1:10157198-10167010 (+)
DBA/2J	ENSMUSG00185003917	lncRNA gene	Chr1:11233039-11242894 (+)
FVB/NJ	ENSMUSG00205018312	lncRNA gene	Chr1:10445615-10455427 (+)
JF1/MsJ	ENSUMUG00000026638	lncRNA gene	Chr1:10525679-10534463 (+)
LP/J	ENSMUSG00230020162	lncRNA gene	Chr1:11193693-11203505 (+)
NOD/ShiLtJ	ENSMUSG00190033483	lncRNA gene	Chr1:10265178-10274989 (+)
NZO/HlLtJ	ENSMUSG00225005905	lncRNA gene	Chr1:14589701-14599599 (+)
PWK/PhJ	ENSLUMG00010022284	lncRNA gene	Chr1:10122768-10131660 (+)
SPRET/EiJ	ENSMSPG00010028123	lncRNA gene	Chr1:10809690-10819002 (+)
WSB/EiJ	ENSIUOG00005011891	lncRNA gene	Chr1:10293392-10303295 (+)

Homology

• Gene Tree
  Gm29283
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  24
• Gene trapped
  24
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000099498 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099498	Ensembl Gene Model | MGI Sequence Detail	36931	C57BL/6J
transcript	ENSMUST00000367635	Ensembl | MGI Sequence Detail	783	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm29283:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5961	Chr1:13140117-13140125 (+)	1,076 bp
Tssr5962	Chr1:13165127-13165130 (+)	26,084 bp