Gm29260 Gene Detail

Summary

• Symbol
  Gm29260
• Name
  predicted gene 29260

• Feature Type
  lncRNA gene
• IDs
  MGI:5579966
  NCBI Gene: 102639765
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:41782183-41978758 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  5626 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579966	lncRNA gene	Chr1:41782154-41978758 (+)
129S1/SvImJ	ENSMUSG00200004714	lncRNA gene	Chr1:39391288-39587239 (+)
A/J	ENSMUSG00195044494	lncRNA gene	Chr1:39087989-39306192 (+)
AKR/J	ENSMUSG00220009859	lncRNA gene	Chr1:39077291-39295493 (+)
BALB/cJ	ENSMUSG00180012579	lncRNA gene	Chr1:39123365-39319359 (+)
C3H/HeJ	ENSMUSG00175001596	lncRNA gene	Chr1:39095900-39314068 (+)
C57BL/6NJ	ENSMUSG00215033119	lncRNA gene	Chr1:39098460-39294455 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004356	lincRNA gene	Chr1:36348649-36506271 (+)
CAST/EiJ	ENSTCUG00005003347	lncRNA gene	Chr1:39178199-39380371 (+)
CBA/J	ENSMUSG00210006460	lncRNA gene	Chr1:38866715-39062655 (+)
DBA/2J	ENSMUSG00185011487	lncRNA gene	Chr1:39967760-40163738 (+)
FVB/NJ	ENSMUSG00205040744	lncRNA gene	Chr1:39079089-39262593 (+)
JF1/MsJ	ENSUMUG00000030265	lncRNA gene	Chr1:39185098-39383795 (+)
LP/J	ENSMUSG00230026650	lncRNA gene	Chr1:39995555-40191539 (+)
NOD/ShiLtJ	ENSMUSG00190040361	lncRNA gene	Chr1:39080245-39276200 (+)
NZO/HlLtJ	ENSMUSG00225000565	lncRNA gene	Chr1:43245556-43441532 (+)
PWK/PhJ	ENSLUMG00010035814	lncRNA gene	Chr1:38704475-38905104 (+)
SPRET/EiJ	ENSMSPG00010030418	lncRNA gene	Chr1:40224919-40423795 (+)
WSB/EiJ	ENSIUOG00005041479	lncRNA gene	Chr1:39013880-39214965 (+)

Homology

• Gene Tree
  Gm29260
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29260
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  598
• Tissues
  1
• cDNA Data
  1
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  65
• RefSeq
  15

• Ensembl
  ENSMUSG00000100832 (Evidence)
• NCBI Gene
  102639765

Representative Sequences			Length	Strain/Species
genomic	102639765	NCBI Gene Model | MGI Sequence Detail	196576	C57BL/6J
transcript	XR_004936037	RefSeq | MGI Sequence Detail	4521	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

References

• Summaries
  All 8

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:308818 Moreau MX, et al., Single-cell transcriptomics of the early developing mouse cerebral cortex disentangle the spatial and temporal components of neuronal fate acquisition. Development. 2021 Jul 15;148(14):dev197962

TSS for Gm29260:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66	Chr1:41782729-41782748 (+)	556 bp
Tssr6504	Chr1:41782836-41782858 (+)	664 bp
Tssr6505	Chr1:41782889-41782901 (+)	712 bp