Gm29254 Gene Detail

Summary

• Symbol
  Gm29254
• Name
  predicted gene 29254

• Feature Type
  lncRNA gene
• IDs
  MGI:5579960
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:20907275-20911050 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579960	lncRNA gene	Chr5:20907275-20911050 (+)
129S1/SvImJ	ENSMUSG00200012142	lncRNA gene	Chr5:16549723-16553498 (+)
A/J	ENSMUSG00195042135	lncRNA gene	Chr5:16020403-16024178 (+)
AKR/J	ENSMUSG00220039903	lncRNA gene	Chr5:16066669-16070444 (+)
BALB/cJ	ENSMUSG00180027018	lncRNA gene	Chr5:15872354-15876129 (+)
C3H/HeJ	ENSMUSG00175028152	lncRNA gene	Chr5:17829175-17832950 (+)
C57BL/6NJ	ENSMUSG00215024186	lncRNA gene	Chr5:16439913-16443688 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000002	lncRNA gene	Chr5:15726170-15729918 (+)
CAST/EiJ	ENSTCUG00005003635	lncRNA gene	Chr5:16120702-16124505 (+)
CBA/J	ENSMUSG00210005838	lncRNA gene	Chr5:16863321-16867096 (+)
DBA/2J	ENSMUSG00185017955	lncRNA gene	Chr5:18359864-18363639 (+)
FVB/NJ	ENSMUSG00205037188	lncRNA gene	Chr5:15571263-15575038 (+)
JF1/MsJ	ENSUMUG00000006375	lncRNA gene	Chr5:22965982-22969792 (+)
LP/J	ENSMUSG00230026653	lncRNA gene	Chr5:22832088-22835863 (+)
NOD/ShiLtJ	ENSMUSG00190005277	lncRNA gene	Chr5:15893905-15897680 (+)
NZO/HlLtJ	ENSMUSG00225009842	lncRNA gene	Chr5:28228177-28231952 (+)
PWK/PhJ	ENSLUMG00010035588	lncRNA gene	Chr5:15996893-16000704 (+)
SPRET/EiJ	ENSMSPG00010031488	lncRNA gene	Chr5:16878338-16882097 (+)
WSB/EiJ	ENSIUOG00005032056	lncRNA gene	Chr5:18695133-18698908 (+)

Homology

• Gene Tree
  Gm29254
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm29254
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000073174 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073174	Ensembl Gene Model | MGI Sequence Detail	3776	C57BL/6J
transcript	ENSMUST00000189302	Ensembl | MGI Sequence Detail	883	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm29254:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45274	Chr5:20907127-20907212 (+)	-105 bp