Gm29208 Gene Detail

Summary

• Symbol
  Gm29208
• Name
  predicted gene 29208

• Feature Type
  lncRNA gene
• IDs
  MGI:5579914
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:105999278-106005294 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579914	lncRNA gene	Chr9:105999278-106005294 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007502	lincRNA gene	Chr9:107902231-107903402 (-)
A/J	MGP_AJ_G0007497	lincRNA gene	Chr9:104017743-104018914 (-)
AKR/J	MGP_AKRJ_G0007469	lincRNA gene	Chr9:106608355-106609526 (-)
BALB/cJ	MGP_BALBcJ_G0007474	lincRNA gene	Chr9:103701924-103703095 (-)
C3H/HeJ	MGP_C3HHeJ_G0007419	lincRNA gene	Chr9:107015093-107016264 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007646	lincRNA gene	Chr9:110866825-110868047 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006827	lincRNA gene	Chr9:101515026-101516198 (-)
CAST/EiJ	MGP_CASTEiJ_G0007322	lincRNA gene	Chr9:106896201-106897499 (-)
CBA/J	MGP_CBAJ_G0007400	lincRNA gene	Chr9:114753282-114754453 (-)
DBA/2J	MGP_DBA2J_G0007426	lincRNA gene	Chr9:103478610-103479781 (-)
FVB/NJ	MGP_FVBNJ_G0007442	lincRNA gene	Chr9:102247707-102248987 (-)
LP/J	MGP_LPJ_G0007506	lincRNA gene	Chr9:108125415-108126586 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007423	lincRNA gene	Chr9:116420563-116421734 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007651	lincRNA gene	Chr9:106840633-106841913 (-)
PWK/PhJ	MGP_PWKPhJ_G0007263	lincRNA gene	Chr9:103772277-103773604 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007167	lincRNA gene	Chr9:106902181-106903366 (-)
WSB/EiJ	MGP_WSBEiJ_G0007382	lincRNA gene	Chr9:106749638-106750917 (-)

Homology

• Gene Tree
  Gm29208
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000100795 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100795	Ensembl Gene Model | MGI Sequence Detail	6017	C57BL/6J
transcript	ENSMUST00000213687	Ensembl | MGI Sequence Detail	2219	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29208:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3002	Chr9:106004287-106004293 (-)	1,004 bp