Gm29017 Gene Detail

Summary

• Symbol
  Gm29017
• Name
  predicted gene 29017

• Feature Type
  lncRNA gene
• IDs
  MGI:5579723
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:59190089-59208479 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  594 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579723	lncRNA gene	Chr1:59190089-59208479 (+)
129S1/SvImJ	ENSMUSG00200019106	lncRNA gene	Chr1:56690546-56708877 (+)
A/J	ENSMUSG00195031029	lncRNA gene	Chr1:56228293-56246562 (+)
AKR/J	ENSMUSG00220040487	lncRNA gene	Chr1:56318477-56336746 (+)
BALB/cJ	ENSMUSG00180014280	lncRNA gene	Chr1:56469903-56488234 (+)
C3H/HeJ	ENSMUSG00175001289	lncRNA gene	Chr1:56605746-56624015 (+)
C57BL/6NJ	ENSMUSG00215036920	lncRNA gene	Chr1:56537608-56555881 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002341	antisense lncRNA gene	Chr1:52871450-52889373 (+)
CAST/EiJ	ENSTCUG00005014010	lncRNA gene	Chr1:56380337-56398617 (+)
CBA/J	ENSMUSG00210054201	lncRNA gene	Chr1:56290746-56309019 (+)
DBA/2J	ENSMUSG00185055844	lncRNA gene	Chr1:57410464-57428737 (+)
FVB/NJ	ENSMUSG00205025975	lncRNA gene	Chr1:56251596-56269867 (+)
JF1/MsJ	ENSUMUG00000049186	lncRNA gene	Chr1:56373446-56391510 (+)
LP/J	ENSMUSG00230030688	lncRNA gene	Chr1:57411082-57429355 (+)
NOD/ShiLtJ	ENSMUSG00190043324	lncRNA gene	Chr1:56450990-56469323 (+)
NZO/HlLtJ	ENSMUSG00225009337	lncRNA gene	Chr1:60617912-60636250 (+)
PWK/PhJ	ENSLUMG00010026197	lncRNA gene	Chr1:55891283-55909627 (+)
SPRET/EiJ	ENSMSPG00010026271	lncRNA gene	Chr1:57833408-57852275 (+)
WSB/EiJ	ENSIUOG00005020998	lncRNA gene	Chr1:56075567-56093850 (+)

Homology

• Gene Tree
  Gm29017
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29017
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000101586 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101586	Ensembl Gene Model | MGI Sequence Detail	18391	C57BL/6J
transcript	ENSMUST00000190598	Ensembl | MGI Sequence Detail	2209	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm29017:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6859	Chr1:59190048-59190064 (+)	-33 bp
Tssr6860	Chr1:59190073-59190080 (+)	-12 bp
Tssr6861	Chr1:59190090-59190118 (+)	15 bp