Gm28942 Gene Detail

Summary

• Symbol
  Gm28942
• Name
  predicted gene 28942

• Feature Type
  lncRNA gene
• IDs
  MGI:5579648
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:82797179-82800849 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579648	lncRNA gene	Chr1:82797179-82800849 (+)
129S1/SvImJ	ENSMUSG00200035344	lncRNA gene	Chr1:80471612-80472155 (+)
A/J	ENSMUSG00195010494	lncRNA gene	Chr1:79874085-79874627 (+)
AKR/J	ENSMUSG00220010537	lncRNA gene	Chr1:80068629-80069164 (+)
BALB/cJ	ENSMUSG00180020484	lncRNA gene	Chr1:80145796-80146338 (+)
C3H/HeJ	ENSMUSG00175018593	lncRNA gene	Chr1:80280242-80280784 (+)
C57BL/6NJ	ENSMUSG00215028368	lncRNA gene	Chr1:80193973-80194515 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004429	lincRNA gene	Chr1:75999667-76000199 (+)
CAST/EiJ	ENSTCUG00005029285	lncRNA gene	Chr1:79863728-79864270 (+)
CBA/J	ENSMUSG00210041503	lncRNA gene	Chr1:80066148-80066683 (+)
DBA/2J	ENSMUSG00185032845	lncRNA gene	Chr1:81102623-81103165 (+)
FVB/NJ	ENSMUSG00205040338	lncRNA gene	Chr1:79616716-79617250 (+)
JF1/MsJ	ENSUMUG00000006185	lncRNA gene	Chr1:79908939-79909479 (+)
LP/J	ENSMUSG00230013581	lncRNA gene	Chr1:81038810-81039352 (+)
NOD/ShiLtJ	ENSMUSG00190041759	lncRNA gene	Chr1:80269691-80270226 (+)
NZO/HlLtJ	ENSMUSG00225004598	lncRNA gene	Chr1:84284122-84284664 (+)
PWK/PhJ	ENSLUMG00010013612	lncRNA gene	Chr1:79533734-79534275 (+)
SPRET/EiJ	ENSMSPG00010019975	lncRNA gene	Chr1:81673742-81674270 (+)
WSB/EiJ	ENSIUOG00005014294	lncRNA gene	Chr1:79836932-79837467 (+)

Homology

• Gene Tree
  Gm28942
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28942
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000100170 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100170	Ensembl Gene Model | MGI Sequence Detail	3671	C57BL/6J
transcript	ENSMUST00000186334	Ensembl | MGI Sequence Detail	1487	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7628	Chr1:82797376-82797386 (+)	202 bp
Tssr7629	Chr1:82797841-82797846 (+)	665 bp
Tssr7630	Chr1:82799433-82799437 (+)	2,256 bp