Gm28935 Gene Detail

Summary

• Symbol
  Gm28935
• Name
  predicted gene 28935

• Feature Type
  lncRNA gene
• IDs
  MGI:5579641
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:11333322-11341383 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic

Strain
Comparison

• SNPs within 2kb
  278 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579641	lncRNA gene	Chr19:11333322-11341383 (+)
129S1/SvImJ	ENSMUSG00200052677	lncRNA gene	Chr19:8019314-8021082 (+)
A/J	ENSMUSG00195053791	lncRNA gene	Chr19:8223653-8225422 (+)
AKR/J	ENSMUSG00220051435	lncRNA gene	Chr19:8134367-8136221 (+)
BALB/cJ	ENSMUSG00180051499	lncRNA gene	Chr19:8588246-8590015 (+)
C3H/HeJ	ENSMUSG00175015411	lncRNA gene	Chr19:7865014-7866782 (+)
C57BL/6NJ	ENSMUSG00215047355	lncRNA gene	Chr19:7936624-7938392 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043476	lncRNA gene	Chr19:7717620-7719479 (+)
CBA/J	ENSMUSG00210050501	lncRNA gene	Chr19:8063551-8065319 (+)
DBA/2J	ENSMUSG00185053931	lncRNA gene	Chr19:8473569-8475337 (+)
FVB/NJ	ENSMUSG00205052869	lncRNA gene	Chr19:7929668-7931520 (+)
JF1/MsJ	ENSUMUG00000056847	lncRNA gene	Chr19:8599177-8601040 (+)
LP/J	ENSMUSG00230054262	lncRNA gene	Chr19:9393899-9395667 (+)
NOD/ShiLtJ	ENSMUSG00190052787	lncRNA gene	Chr19:7686333-7688102 (+)
NZO/HlLtJ	ENSMUSG00225047277	lncRNA gene	Chr19:13102823-13104591 (+)
PWK/PhJ	ENSLUMG00010009163	lncRNA gene	Chr19:8000281-8002143 (+)
SPRET/EiJ	ENSMSPG00010051381	lncRNA gene	Chr19:7809886-7810441 (+)
WSB/EiJ	ENSIUOG00005051333	lncRNA gene	Chr19:7593390-7595246 (+)

Homology

• Gene Tree
  Gm28935
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm28935
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000100392 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100392	Ensembl Gene Model | MGI Sequence Detail	8062	C57BL/6J
transcript	ENSMUST00000379719	Ensembl | MGI Sequence Detail	1178	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360

TSS for Gm28935:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155160	Chr19:11333454-11333467 (+)	139 bp
Tssr155161	Chr19:11339637-11339652 (+)	6,323 bp