Gm28913 Gene Detail

Summary

• Symbol
  Gm28913
• Name
  predicted gene 28913
• Synonyms
  Gm29953

• Feature Type
  lncRNA gene
• IDs
  MGI:5579619
  NCBI Gene: 102631674
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:131172705-131194486 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  746 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579619	lncRNA gene	Chr1:131172705-131195702 (+)
129S1/SvImJ	ENSMUSG00200009393	lncRNA gene	Chr1:128767352-128770776 (+)
A/J	ENSMUSG00195046059	lncRNA gene	Chr1:127853501-127856916 (+)
AKR/J	ENSMUSG00220050763	lncRNA gene	Chr1:127699147-127702556 (+)
BALB/cJ	ENSMUSG00180040848	lncRNA gene	Chr1:128421956-128425380 (+)
C3H/HeJ	ENSMUSG00175047155	lncRNA gene	Chr1:128098209-128101626 (+)
C57BL/6NJ	ENSMUSG00215046096	lncRNA gene	Chr1:128113893-128117306 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002393	antisense lncRNA gene	Chr1:122846500-122849951 (+)
CAST/EiJ	ENSTCUG00005039785	lncRNA gene	Chr1:127035272-127038668 (+)
CBA/J	ENSMUSG00210028825	lncRNA gene	Chr1:128016435-128019854 (+)
DBA/2J	ENSMUSG00185034572	lncRNA gene	Chr1:132366212-132369636 (+)
FVB/NJ	ENSMUSG00205046169	lncRNA gene	Chr1:127353168-127356592 (+)
JF1/MsJ	ENSUMUG00000053200	lncRNA gene	Chr1:131537217-131540621 (+)
LP/J	ENSMUSG00230001214	lncRNA gene	Chr1:131945521-131948945 (+)
NOD/ShiLtJ	ENSMUSG00190046815	lncRNA gene	Chr1:128008115-128011530 (+)
NZO/HlLtJ	ENSMUSG00225021030	lncRNA gene	Chr1:135682351-135685775 (+)
PWK/PhJ	ENSLUMG00010029421	lncRNA gene	Chr1:127143335-127146739 (+)
SPRET/EiJ	ENSMSPG00010046789	lncRNA gene	Chr1:129943033-129945891 (+)
WSB/EiJ	ENSIUOG00005048792	lncRNA gene	Chr1:127761548-127764957 (+)

Homology

• Gene Tree
  Gm28913
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28913
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  5

• Ensembl
  ENSMUSG00000102055 (Evidence)
• NCBI Gene
  102631674

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102055	Ensembl Gene Model | MGI Sequence Detail	21782	C57BL/6J
transcript	ENSMUST00000344356	Ensembl | MGI Sequence Detail	657	Not Applicable

Other
Accession IDs

MGI:5589112

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28913:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8625	Chr1:131173060-131173071 (+)	361 bp