Gm28888 Gene Detail

Summary

• Symbol
  Gm28888
• Name
  predicted gene 28888

• Feature Type
  lncRNA gene
• IDs
  MGI:5579594
  NCBI Gene: 102636823
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:88387405-88420706 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  1030 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579594	lncRNA gene	Chr1:88387405-88425016 (+)
129S1/SvImJ	ENSMUSG00200038803	lncRNA gene	Chr1:85629144-85635012 (+)
A/J	ENSMUSG00195033702	lncRNA gene	Chr1:85189978-85195846 (+)
AKR/J	ENSMUSG00220045572	lncRNA gene	Chr1:85337858-85343729 (+)
BALB/cJ	ENSMUSG00180016930	lncRNA gene	Chr1:85476835-85482714 (+)
C3H/HeJ	ENSMUSG00175001637	lncRNA gene	Chr1:85355731-85361614 (+)
C57BL/6NJ	ENSMUSG00215032856	lncRNA gene	Chr1:85286460-85292335 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004436	lincRNA gene	Chr1:80954213-80960247 (+)
CAST/EiJ	ENSTCUG00005007528	lncRNA gene	Chr1:84940217-84946046 (+)
CBA/J	ENSMUSG00210012562	lncRNA gene	Chr1:85201038-85206917 (+)
DBA/2J	ENSMUSG00185016882	lncRNA gene	Chr1:89674180-89680047 (+)
FVB/NJ	ENSMUSG00205043609	lncRNA gene	Chr1:84623636-84629507 (+)
JF1/MsJ	ENSUMUG00000024522	lncRNA gene	Chr1:88441818-88447655 (+)
LP/J	ENSMUSG00230020706	lncRNA gene	Chr1:88965438-88971305 (+)
NOD/ShiLtJ	ENSMUSG00190035907	lncRNA gene	Chr1:85264484-85270356 (+)
NZO/HlLtJ	ENSMUSG00225004053	lncRNA gene	Chr1:92861621-92867489 (+)
PWK/PhJ	ENSLUMG00010048935	lncRNA gene	Chr1:84837129-84842985 (+)
SPRET/EiJ	ENSMSPG00010047202	lncRNA gene	Chr1:86856819-86863252 (+)
WSB/EiJ	ENSIUOG00005043065	lncRNA gene	Chr1:84888983-84894871 (+)

Homology

• Gene Tree
  Gm28888
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28888
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  4

• Ensembl
  ENSMUSG00000100908 (Evidence)
• NCBI Gene
  102636823

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100908	Ensembl Gene Model | MGI Sequence Detail	33302	C57BL/6J
transcript	ENSMUST00000354720	Ensembl | MGI Sequence Detail	1485	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm28888:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7972	Chr1:88400106-88400110 (+)	12,703 bp
Tssr7973	Chr1:88400124-88400134 (+)	12,724 bp