Gm28874 Gene Detail

Summary

• Symbol
  Gm28874
• Name
  predicted gene 28874

• Feature Type
  lncRNA gene
• IDs
  MGI:5579580
  NCBI Gene: 102640216
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:131987847-131994419 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579580	lncRNA gene	Chr4:131987839-131996152 (+)
129S1/SvImJ	ENSMUSG00200021048	lncRNA gene	Chr4:125447502-125450648 (+)
A/J	ENSMUSG00195045593	lncRNA gene	Chr4:126772116-126775249 (+)
AKR/J	ENSMUSG00220048330	lncRNA gene	Chr4:125763871-125767004 (+)
BALB/cJ	ENSMUSG00180049272	lncRNA gene	Chr4:124405866-124409001 (+)
C3H/HeJ	ENSMUSG00175046880	lncRNA gene	Chr4:125418258-125421391 (+)
C57BL/6NJ	ENSMUSG00215052598	lncRNA gene	Chr4:126922180-126925313 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049152	lncRNA gene	Chr4:126315156-126317945 (+)
CBA/J	ENSMUSG00210053941	lncRNA gene	Chr4:125047228-125050361 (+)
DBA/2J	ENSMUSG00185053017	lncRNA gene	Chr4:126579639-126582772 (+)
FVB/NJ	ENSMUSG00205048750	lncRNA gene	Chr4:124821034-124824142 (+)
JF1/MsJ	ENSUMUG00000047245	lncRNA gene	Chr4:127245854-127248613 (+)
LP/J	ENSMUSG00230038782	lncRNA gene	Chr4:130385989-130389133 (+)
NOD/ShiLtJ	ENSMUSG00190049489	lncRNA gene	Chr4:124811949-124815082 (+)
NZO/HlLtJ	ENSMUSG00225026691	lncRNA gene	Chr4:136290263-136293396 (+)
PWK/PhJ	ENSLUMG00010050265	lncRNA gene	Chr4:124265098-124268233 (+)
SPRET/EiJ	ENSMSPG00010045897	lncRNA gene	Chr4:126338440-126341228 (+)
WSB/EiJ	ENSIUOG00005045592	lncRNA gene	Chr4:124700465-124703621 (+)

Homology

• Gene Tree
  Gm28874
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm28874
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100813 (Evidence)
• NCBI Gene
  102640216

Representative Sequences			Length	Strain/Species
genomic	102640216	NCBI Gene Model | MGI Sequence Detail	6573	C57BL/6J
transcript	XR_390809	RefSeq | MGI Sequence Detail	879	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm28874:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39362	Chr4:131987815-131987828 (+)	-25 bp
Tssr39363	Chr4:131987832-131987849 (+)	-6 bp