Gm28857 Gene Detail

Summary

• Symbol
  Gm28857
• Name
  predicted gene 28857

• Feature Type
  lncRNA gene
• IDs
  MGI:5579563
  NCBI Gene: 102640440
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:130667655-130669028 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579563	lncRNA gene	Chr1:130660855-130692155 (-)
129S1/SvImJ	ENSMUSG00200009445	lncRNA gene	Chr1:128238523-128262748 (-)
A/J	ENSMUSG00195045946	lncRNA gene	Chr1:127329893-127354121 (-)
AKR/J	ENSMUSG00220049959	lncRNA gene	Chr1:127176172-127200408 (-)
BALB/cJ	ENSMUSG00180039844	lncRNA gene	Chr1:127893074-127917302 (-)
C3H/HeJ	ENSMUSG00175046268	lncRNA gene	Chr1:127574612-127598833 (-)
C57BL/6NJ	ENSMUSG00215045856	lncRNA gene	Chr1:127590235-127614458 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002390	antisense lncRNA gene	Chr1:122320897-122322097 (-)
CAST/EiJ	ENSTCUG00005039941	lncRNA gene	Chr1:126512110-126536084 (-)
CBA/J	ENSMUSG00210028773	lncRNA gene	Chr1:127487111-127515404 (-)
DBA/2J	ENSMUSG00185002179	lncRNA gene	Chr1:131837353-131861572 (-)
FVB/NJ	ENSMUSG00205045442	lncRNA gene	Chr1:126795106-126819334 (-)
JF1/MsJ	ENSUMUG00000002719	lncRNA gene	Chr1:131016192-131036344 (-)
LP/J	ENSMUSG00230001371	lncRNA gene	Chr1:131416733-131440954 (-)
NOD/ShiLtJ	ENSMUSG00190046526	lncRNA gene	Chr1:127484546-127508768 (-)
NZO/HlLtJ	ENSMUSG00225021371	lncRNA gene	Chr1:135153512-135177740 (-)
PWK/PhJ	ENSLUMG00010028372	lncRNA gene	Chr1:126621970-126642127 (-)
SPRET/EiJ	ENSMSPG00010046131	lncRNA gene	Chr1:129416622-129440190 (-)
WSB/EiJ	ENSIUOG00005048994	lncRNA gene	Chr1:127221976-127246137 (-)

Homology

• Gene Tree
  Gm28857
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28857
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  1

• Ensembl
  ENSMUSG00000099556 (Evidence)
• NCBI Gene
  102640440

Representative Sequences			Length	Strain/Species
genomic	102640440	NCBI Gene Model | MGI Sequence Detail	1374	C57BL/6J
transcript	NR_168728	RefSeq | MGI Sequence Detail	633	ZRU/MplStud

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28857:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13525	Chr1:130669023-130669033 (-)	0 bp