Gm28856 Gene Detail

Summary

• Symbol
  Gm28856
• Name
  predicted gene 28856

• Feature Type
  lncRNA gene
• IDs
  MGI:5579562
  NCBI Gene: 433347
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:130694121-130712170 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  783 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579562	lncRNA gene	Chr1:130694121-130712170 (+)
129S1/SvImJ	ENSMUSG00200009460	lncRNA gene	Chr1:128264992-128283041 (+)
A/J	ENSMUSG00195046001	lncRNA gene	Chr1:127356365-127374401 (+)
AKR/J	ENSMUSG00220049973	lncRNA gene	Chr1:127202652-127220660 (+)
BALB/cJ	ENSMUSG00180039880	lncRNA gene	Chr1:127919546-127937598 (+)
C3H/HeJ	ENSMUSG00175046298	lncRNA gene	Chr1:127601077-127619115 (+)
C57BL/6NJ	ENSMUSG00215045862	lncRNA gene	Chr1:127616702-127634749 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004493	lincRNA gene	Chr1:122346887-122361668 (+)
CAST/EiJ	ENSTCUG00005039967	lncRNA gene	Chr1:126538178-126556669 (+)
CBA/J	ENSMUSG00210028793	lncRNA gene	Chr1:127519451-127537595 (+)
DBA/2J	ENSMUSG00185002183	lncRNA gene	Chr1:131863816-131881855 (+)
FVB/NJ	ENSMUSG00205045476	lncRNA gene	Chr1:126821578-126839630 (+)
JF1/MsJ	ENSUMUG00000002806	lncRNA gene	Chr1:131038596-131056880 (+)
LP/J	ENSMUSG00230001272	lncRNA gene	Chr1:131443198-131461237 (+)
NOD/ShiLtJ	ENSMUSG00190046556	lncRNA gene	Chr1:127511014-127529052 (+)
NZO/HlLtJ	ENSMUSG00225021186	lncRNA gene	Chr1:135179984-135198021 (+)
PWK/PhJ	ENSLUMG00010028454	lncRNA gene	Chr1:126644380-126662765 (+)
SPRET/EiJ	ENSMSPG00010046155	lncRNA gene	Chr1:129442323-129460422 (+)
WSB/EiJ	ENSIUOG00005049008	lncRNA gene	Chr1:127250180-127274819 (+)

Homology

• Gene Tree
  Gm28856
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28856
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000100106 (Evidence)
• NCBI Gene
  433347

Representative Sequences			Length	Strain/Species
genomic	433347	NCBI Gene Model | MGI Sequence Detail	18050	C57BL/6J
transcript	NR_151623	RefSeq | MGI Sequence Detail	2828	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28856:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8569	Chr1:130692708-130692725 (+)	-1,404 bp