Cdhr17 Gene Detail

Summary

• Symbol
  Cdhr17
• Name
  cadherin related family member 17
• Synonyms
  Gm28710

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5579416
  NCBI Gene: 102640594
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:16996789-17087437 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  2838 from dbSNP Build 142
• Strain Annotations
  36

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579416	protein coding gene	Chr5:16996789-17087437 (+)
129S1/SvImJ	ENSMUSG00200011938	lncRNA gene	Chr5:12678549-12680293 (+)
129S1/SvImJ	ENSMUSG00200009614	protein coding gene	Chr5:12634380-12724666 (+)
A/J	ENSMUSG00195041696	lncRNA gene	Chr5:12140578-12142322 (+)
A/J	ENSMUSG00195038935	protein coding gene	Chr5:12096477-12186727 (+)
AKR/J	ENSMUSG00220038430	lncRNA gene	Chr5:12112285-12114029 (+)
AKR/J	ENSMUSG00220033779	protein coding gene	Chr5:12068243-12164909 (+)
BALB/cJ	ENSMUSG00180027362	lncRNA gene	Chr5:11997750-11999494 (+)
BALB/cJ	ENSMUSG00180022372	protein coding gene	Chr5:11953644-12043896 (+)
C3H/HeJ	ENSMUSG00175025493	protein coding gene	Chr5:13905620-13995869 (+)
C3H/HeJ	ENSMUSG00175028357	lncRNA gene	Chr5:13949719-13951463 (+)
C57BL/6NJ	ENSMUSG00215023755	lncRNA gene	Chr5:12560504-12562248 (+)
C57BL/6NJ	ENSMUSG00215015210	protein coding gene	Chr5:12516398-12606639 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005985	lincRNA gene	Chr5:12098524-12100490 (+)
CAST/EiJ	ENSTCUG00005003024	protein coding gene	Chr5:12271425-12367113 (+)
CAST/EiJ	ENSTCUG00005003492	lncRNA gene	Chr5:12315580-12317324 (+)
CBA/J	ENSMUSG00210004649	protein coding gene	Chr5:12945003-13035251 (+)
CBA/J	ENSMUSG00210005196	lncRNA gene	Chr5:12989102-12990846 (+)
DBA/2J	ENSMUSG00185017598	lncRNA gene	Chr5:14480265-14482009 (+)
DBA/2J	ENSMUSG00185016756	protein coding gene	Chr5:14436127-14526390 (+)
FVB/NJ	ENSMUSG00205031519	lncRNA gene	Chr5:11720211-11721955 (+)
FVB/NJ	ENSMUSG00205026920	protein coding gene	Chr5:11676113-11766358 (+)
JF1/MsJ	ENSUMUG00000003142	lncRNA gene	Chr5:19128465-19130209 (+)
JF1/MsJ	ENSUMUG00000001432	protein coding gene	Chr5:19084368-19173694 (+)
LP/J	ENSMUSG00230003312	lncRNA gene	Chr5:18999503-19001247 (+)
LP/J	ENSMUSG00230002993	protein coding gene	Chr5:18955340-19045615 (+)
NOD/ShiLtJ	ENSMUSG00190004878	protein coding gene	Chr5:11976814-12067066 (+)
NOD/ShiLtJ	ENSMUSG00190004949	lncRNA gene	Chr5:12020912-12022656 (+)
NZO/HlLtJ	ENSMUSG00225008449	protein coding gene	Chr5:24322365-24412619 (+)
NZO/HlLtJ	ENSMUSG00225009715	lncRNA gene	Chr5:24366471-24368215 (+)
PWK/PhJ	ENSLUMG00010031863	protein coding gene	Chr5:12120572-12209860 (+)
PWK/PhJ	ENSLUMG00010037352	lncRNA gene	Chr5:12164646-12166389 (+)
SPRET/EiJ	ENSMSPG00010030241	lncRNA gene	Chr5:12926237-12927985 (+)
SPRET/EiJ	ENSMSPG00010029095	protein coding gene	Chr5:12881404-12969451 (+)
WSB/EiJ	ENSIUOG00005030502	protein coding gene	Chr5:14785494-14887361 (+)
WSB/EiJ	ENSIUOG00005032552	lncRNA gene	Chr5:14829539-14831283 (+)

Homology

• Human Ortholog
  CDHR17P, cadherin related family member 17, pseudogene

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CDHR17P, cadherin related family member 17, pseudogene
  
• Links
  HGNC:53741

  NCBI Gene ID: 127566420

  
  
• Chr Location
  7q21.11

---

• MGI Vertebrate Homology
  Cdhr17 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: CDHR17P

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Cdhr17
• Find Mice (IMSR)
  17 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  10
• GO References
  4

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000099854 (Evidence), ENSMUSG00000109903 (Evidence)
• NCBI Gene
  102640594

Representative Sequences			Length	Strain/Species
genomic	102640594	NCBI Gene Model | MGI Sequence Detail	90649	C57BL/6J
transcript	NM_001378608	RefSeq | MGI Sequence Detail	3393	ZRU/MplStud
polypeptide	NP_001365537	RefSeq | MGI Sequence Detail	962	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR020894 Cadherin conserved site
  IPR002126 Cadherin-like
  IPR015919 Cadherin-like superfamily

Other
Accession IDs

MGI:7382745

References

• Summaries
  All 20

  Diseases 1

  Gene Ontology 4

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:119563 Alt B, et al., Arteries define the position of the thyroid gland during its developmental relocalisation. Development. 2006 Oct;133(19):3797-804

TSS for Cdhr17:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45231	Chr5:17075132-17075141 (+)	78,348 bp
Tssr45232	Chr5:17075165-17075176 (+)	78,382 bp
Tssr45233	Chr5:17075212-17075213 (+)	78,424 bp
Tssr45234	Chr5:17075222-17075236 (+)	78,440 bp
Tssr45235	Chr5:17075241-17075252 (+)	78,458 bp
Tssr45236	Chr5:17075253-17075261 (+)	78,468 bp