Gm28706 Gene Detail

Summary

• Symbol
  Gm28706
• Name
  predicted gene 28706

• Feature Type
  lncRNA gene
• IDs
  MGI:5579412
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:125362393-125394111 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  792 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579412	lncRNA gene	Chr1:125362393-125394111 (+)
129S1/SvImJ	ENSMUSG00200009779	lncRNA gene	Chr1:122940933-122943762 (+)
A/J	ENSMUSG00195045393	lncRNA gene	Chr1:122025906-122028726 (+)
AKR/J	ENSMUSG00220025779	lncRNA gene	Chr1:121880640-121883460 (+)
BALB/cJ	ENSMUSG00180040910	lncRNA gene	Chr1:122602672-122605501 (+)
C3H/HeJ	ENSMUSG00175047942	lncRNA gene	Chr1:122307954-122310774 (+)
C57BL/6NJ	ENSMUSG00215014401	lncRNA gene	Chr1:122291370-122294201 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004490	lincRNA gene	Chr1:117212243-117215283 (+)
CAST/EiJ	ENSTCUG00005006657	lncRNA gene	Chr1:121215523-121218366 (+)
CBA/J	ENSMUSG00210001407	lncRNA gene	Chr1:122152876-122155694 (+)
DBA/2J	ENSMUSG00185002188	lncRNA gene	Chr1:126541945-126544765 (+)
FVB/NJ	ENSMUSG00205046756	lncRNA gene	Chr1:121619937-121622766 (+)
JF1/MsJ	ENSUMUG00000003174	lncRNA gene	Chr1:125706146-125708966 (+)
LP/J	ENSMUSG00230001490	lncRNA gene	Chr1:126121950-126124779 (+)
NOD/ShiLtJ	ENSMUSG00190006850	lncRNA gene	Chr1:122171686-122174515 (+)
NZO/HlLtJ	ENSMUSG00225005101	lncRNA gene	Chr1:129845833-129848692 (+)
PWK/PhJ	ENSLUMG00010014959	lncRNA gene	Chr1:121314605-121317429 (+)
SPRET/EiJ	ENSMSPG00010046944	lncRNA gene	Chr1:124019222-124022082 (+)
WSB/EiJ	ENSIUOG00005048878	lncRNA gene	Chr1:121917478-121920307 (+)

Homology

• Gene Tree
  Gm28706
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28706
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000102063 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102063	Ensembl Gene Model | MGI Sequence Detail	31719	C57BL/6J
transcript	ENSMUST00000305433	Ensembl | MGI Sequence Detail	923	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28706:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8437	Chr1:125362508-125362522 (+)	122 bp
Tssr8438	Chr1:125362620-125362631 (+)	233 bp
Tssr8440	Chr1:125365959-125365993 (+)	3,583 bp
Tssr8441	Chr1:125372301-125372308 (+)	9,912 bp