Gm28643 Gene Detail

Summary

• Symbol
  Gm28643
• Name
  predicted gene 28643

• Feature Type
  lncRNA gene
• IDs
  MGI:5579349
  NCBI Gene: 102632352
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:45008217-45058479 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  1045 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579349	lncRNA gene	Chr2:45008217-45058479 (+)
129S1/SvImJ	ENSMUSG00200011308	lncRNA gene	Chr2:42062646-42074244 (+)
A/J	ENSMUSG00195010210	lncRNA gene	Chr2:42155313-42166916 (+)
AKR/J	ENSMUSG00220020781	lncRNA gene	Chr2:42302897-42314501 (+)
BALB/cJ	ENSMUSG00180021830	lncRNA gene	Chr2:42161448-42172994 (+)
C3H/HeJ	ENSMUSG00175014310	lncRNA gene	Chr2:42149533-42161131 (+)
C57BL/6NJ	ENSMUSG00215014952	lncRNA gene	Chr2:42201310-42212854 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005368	lincRNA gene	Chr2:40747099-40758646 (+)
CAST/EiJ	ENSTCUG00005001660	lncRNA gene	Chr2:41806962-41818527 (+)
CBA/J	ENSMUSG00210001113	lncRNA gene	Chr2:42203479-42215080 (+)
DBA/2J	ENSMUSG00185002637	lncRNA gene	Chr2:42063547-42075145 (+)
FVB/NJ	ENSMUSG00205001892	lncRNA gene	Chr2:41839956-41851550 (+)
JF1/MsJ	ENSUMUG00000000576	lncRNA gene	Chr2:41885005-41896967 (+)
LP/J	ENSMUSG00230000760	lncRNA gene	Chr2:43984034-43995578 (+)
NOD/ShiLtJ	ENSMUSG00190002282	lncRNA gene	Chr2:42042155-42053753 (+)
NZO/HlLtJ	ENSMUSG00225000687	lncRNA gene	Chr2:51694801-51706399 (+)
PWK/PhJ	ENSLUMG00010004673	lncRNA gene	Chr2:42065919-42077871 (+)
SPRET/EiJ	ENSMSPG00010011101	lncRNA gene	Chr2:42931257-42942809 (+)
WSB/EiJ	ENSIUOG00005001245	lncRNA gene	Chr2:42060527-42072089 (+)

Homology

• Gene Tree
  Gm28643
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000100135 (Evidence)
• NCBI Gene
  102632352

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100135	Ensembl Gene Model | MGI Sequence Detail	50263	C57BL/6J
transcript	ENSMUST00000278716	Ensembl | MGI Sequence Detail	1059	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm28643:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17636	Chr2:45007243-45007296 (+)	-947 bp
Tssr17637	Chr2:45023487-45023492 (+)	15,273 bp