Gm28640 Gene Detail

Summary

• Symbol
  Gm28640
• Name
  predicted gene 28640

• Feature Type
  lncRNA gene
• IDs
  MGI:5579346
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:73957596-73961102 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579346	lncRNA gene	Chr2:73957596-73961102 (+)
129S1/SvImJ	ENSMUSG00200037038	lncRNA gene	Chr2:71030225-71030774 (+)
A/J	ENSMUSG00195020449	lncRNA gene	Chr2:71176868-71177417 (+)
AKR/J	ENSMUSG00220040182	lncRNA gene	Chr2:71141462-71142011 (+)
BALB/cJ	ENSMUSG00180006887	lncRNA gene	Chr2:71130606-71131155 (+)
C3H/HeJ	ENSMUSG00175040207	lncRNA gene	Chr2:71244714-71245263 (+)
C57BL/6NJ	ENSMUSG00215034310	lncRNA gene	Chr2:71072192-71072741 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005403	lincRNA gene	Chr2:68943730-68944279 (+)
CAST/EiJ	ENSTCUG00005009630	lncRNA gene	Chr2:70561195-70561744 (+)
CBA/J	ENSMUSG00210002442	lncRNA gene	Chr2:71287376-71287925 (+)
DBA/2J	ENSMUSG00185042534	lncRNA gene	Chr2:71123206-71123755 (+)
FVB/NJ	ENSMUSG00205037253	lncRNA gene	Chr2:70586867-70587416 (+)
JF1/MsJ	ENSUMUG00000006561	lncRNA gene	Chr2:70793176-70793725 (+)
LP/J	ENSMUSG00230026271	lncRNA gene	Chr2:72929838-72930387 (+)
NOD/ShiLtJ	ENSMUSG00190010853	lncRNA gene	Chr2:71209551-71210100 (+)
NZO/HlLtJ	ENSMUSG00225015318	lncRNA gene	Chr2:80672728-80673277 (+)
PWK/PhJ	ENSLUMG00010034428	lncRNA gene	Chr2:71023405-71023954 (+)
SPRET/EiJ	ENSMSPG00010021309	lncRNA gene	Chr2:72434433-72434982 (+)
WSB/EiJ	ENSIUOG00005019454	lncRNA gene	Chr2:71253129-71253678 (+)

Homology

• Gene Tree
  Gm28640
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm28640
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000099502 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099502	Ensembl Gene Model | MGI Sequence Detail	3507	C57BL/6J
transcript	ENSMUST00000293418	Ensembl | MGI Sequence Detail	741	Not Applicable

References

• Summaries
  All 12

  Phenotypes 9
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087