Gm28548 Gene Detail

Summary

• Symbol
  Gm28548
• Name
  predicted gene 28548

• Feature Type
  lncRNA gene
• IDs
  MGI:5579254
  NCBI Gene: 102636046
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:104239030-104262230 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  823 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579254	lncRNA gene	Chr9:104233169-104262250 (+)
129S1/SvImJ	ENSMUSG00200044589	lncRNA gene	Chr9:101400932-101423964 (+)
A/J	ENSMUSG00195021454	lncRNA gene	Chr9:100625620-100648657 (+)
AKR/J	ENSMUSG00220041830	lncRNA gene	Chr9:101015213-101038250 (+)
BALB/cJ	ENSMUSG00180026360	lncRNA gene	Chr9:100942127-100965143 (+)
C3H/HeJ	ENSMUSG00175047573	lncRNA gene	Chr9:101284716-101307751 (+)
C57BL/6NJ	ENSMUSG00215041700	lncRNA gene	Chr9:101276469-101299698 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006826	lincRNA gene	Chr9:99780191-99803457 (+)
CAST/EiJ	ENSTCUG00005013931	lncRNA gene	Chr9:101079302-101102396 (+)
CBA/J	ENSMUSG00210015904	lncRNA gene	Chr9:101119565-101142688 (+)
DBA/2J	ENSMUSG00185012621	lncRNA gene	Chr9:101286984-101310016 (+)
FVB/NJ	ENSMUSG00205031229	lncRNA gene	Chr9:101286285-101309317 (+)
JF1/MsJ	ENSUMUG00000046483	lncRNA gene	Chr9:101128808-101152090 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190042834	lncRNA gene	Chr9:100927766-100950801 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010028066	lncRNA gene	Chr9:101071105-101094323 (+)
SPRET/EiJ	ENSMSPG00010048524	lncRNA gene	Chr9:102952913-102976000 (+)
WSB/EiJ	ENSIUOG00005024831	lncRNA gene	Chr9:100362476-100385580 (+)

Homology

• Gene Tree
  Gm28548
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000099599 (Evidence)
• NCBI Gene
  102636046

Representative Sequences			Length	Strain/Species
genomic	102636046	NCBI Gene Model | MGI Sequence Detail	23201	C57BL/6J
transcript	NR_166651	RefSeq | MGI Sequence Detail	410	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm28548:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86815	Chr9:104239028-104239032 (+)	0 bp
Tssr86816	Chr9:104239035-104239045 (+)	10 bp
Tssr86817	Chr9:104239092-104239098 (+)	65 bp