Gm28536 Gene Detail

Summary

• Symbol
  Gm28536
• Name
  predicted gene 28536

• Feature Type
  lncRNA gene
• IDs
  MGI:5579242
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:93562890-93566793 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579242	lncRNA gene	Chr1:93562890-93566793 (+)
129S1/SvImJ	ENSMUSG00200038826	lncRNA gene	Chr1:90780148-90781463 (+)
A/J	ENSMUSG00195034847	lncRNA gene	Chr1:90339087-90340402 (+)
AKR/J	ENSMUSG00220046469	lncRNA gene	Chr1:90493800-90495115 (+)
BALB/cJ	ENSMUSG00180017746	lncRNA gene	Chr1:90656295-90657610 (+)
C3H/HeJ	ENSMUSG00175001577	lncRNA gene	Chr1:90534179-90535495 (+)
C57BL/6NJ	ENSMUSG00215035777	lncRNA gene	Chr1:90465459-90466775 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002378	antisense lncRNA gene	Chr1:86103525-86104863 (+)
CAST/EiJ	ENSTCUG00005008043	lncRNA gene	Chr1:90115195-90116512 (+)
CBA/J	ENSMUSG00210012408	lncRNA gene	Chr1:90379375-90380691 (+)
DBA/2J	ENSMUSG00185014128	lncRNA gene	Chr1:94852409-94853724 (+)
FVB/NJ	ENSMUSG00205042791	lncRNA gene	Chr1:89788788-89790103 (+)
JF1/MsJ	ENSUMUG00000023892	lncRNA gene	Chr1:93590391-93591708 (+)
LP/J	ENSMUSG00230023853	lncRNA gene	Chr1:94116240-94117555 (+)
NOD/ShiLtJ	ENSMUSG00190033166	lncRNA gene	Chr1:90424007-90425322 (+)
NZO/HlLtJ	ENSMUSG00225003683	lncRNA gene	Chr1:98014301-98015617 (+)
PWK/PhJ	ENSLUMG00010048920	lncRNA gene	Chr1:89976576-89977879 (+)
SPRET/EiJ	ENSMSPG00010000818	lncRNA gene	Chr1:92012377-92013692 (+)
WSB/EiJ	ENSIUOG00005043246	lncRNA gene	Chr1:90075572-90076888 (+)

Homology

• Gene Tree
  Gm28536
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28536
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000100927 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100927	Ensembl Gene Model | MGI Sequence Detail	3904	C57BL/6J
transcript	ENSMUST00000190971	Ensembl | MGI Sequence Detail	1317	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28536:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8187	Chr1:93562891-93562932 (+)	22 bp