Gm28535 Gene Detail

Summary

• Symbol
  Gm28535
• Name
  predicted gene 28535

• Feature Type
  lncRNA gene
• IDs
  MGI:5579241
  NCBI Gene: 105246665
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:93233686-93245034 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579241	lncRNA gene	Chr1:93233673-93245034 (+)
129S1/SvImJ	ENSMUSG00200038542	lncRNA gene	Chr1:90449940-90461291 (+)
A/J	ENSMUSG00195033844	lncRNA gene	Chr1:90008853-90020204 (+)
AKR/J	ENSMUSG00220046313	lncRNA gene	Chr1:90163579-90174930 (+)
BALB/cJ	ENSMUSG00180017967	lncRNA gene	Chr1:90326075-90337426 (+)
C3H/HeJ	ENSMUSG00175001699	lncRNA gene	Chr1:90204010-90215363 (+)
C57BL/6NJ	ENSMUSG00215034808	lncRNA gene	Chr1:90136193-90147554 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002377	antisense lncRNA gene	Chr1:85772746-85790347 (+)
CAST/EiJ	ENSTCUG00005007935	lncRNA gene	Chr1:89786519-89797879 (+)
CBA/J	ENSMUSG00210012412	lncRNA gene	Chr1:90049218-90060571 (+)
DBA/2J	ENSMUSG00185014249	lncRNA gene	Chr1:94522202-94533553 (+)
FVB/NJ	ENSMUSG00205044365	lncRNA gene	Chr1:89451793-89463144 (+)
JF1/MsJ	ENSUMUG00000022512	lncRNA gene	Chr1:93263223-93274595 (+)
LP/J	ENSMUSG00230024157	lncRNA gene	Chr1:93786043-93797394 (+)
NOD/ShiLtJ	ENSMUSG00190034290	lncRNA gene	Chr1:90093804-90105155 (+)
NZO/HlLtJ	ENSMUSG00225003856	lncRNA gene	Chr1:97685127-97696488 (+)
PWK/PhJ	ENSLUMG00010047241	lncRNA gene	Chr1:89649718-89661059 (+)
SPRET/EiJ	ENSMSPG00010047269	lncRNA gene	Chr1:91685733-91698971 (+)
WSB/EiJ	ENSIUOG00005042668	lncRNA gene	Chr1:89746377-89757720 (+)

Homology

• Gene Tree
  Gm28535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28535
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000101172 (Evidence)
• NCBI Gene
  105246665

Representative Sequences			Length	Strain/Species
genomic	105246665	NCBI Gene Model | MGI Sequence Detail	11349	C57BL/6J
transcript	NR_151531	RefSeq | MGI Sequence Detail	888	ZRU/MplStud

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm28535:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8168	Chr1:93233666-93233683 (+)	-11 bp