Gm28529 Gene Detail

Summary

• Symbol
  Gm28529
• Name
  predicted gene 28529

• Feature Type
  lncRNA gene
• IDs
  MGI:5579235
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:6490143-6496962 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579235	lncRNA gene	Chr18:6490143-6496962 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003429	antisense lncRNA gene	Chr18:3361392-3368232 (+)
A/J	MGP_AJ_G0003407	antisense lncRNA gene	Chr18:3373997-3380772 (+)
AKR/J	MGP_AKRJ_G0003388	antisense lncRNA gene	Chr18:3456420-3466049 (+)
BALB/cJ	MGP_BALBcJ_G0003396	antisense lncRNA gene	Chr18:3347222-3354050 (+)
C3H/HeJ	MGP_C3HHeJ_G0003346	antisense lncRNA gene	Chr18:3364133-3374646 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003536	antisense lncRNA gene	Chr18:3601317-3608593 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003049	antisense lncRNA gene	Chr18:3123102-3131804 (+)
CAST/EiJ	MGP_CASTEiJ_G0003308	antisense lncRNA gene	Chr18:3393055-3399837 (+)
CBA/J	MGP_CBAJ_G0003342	antisense lncRNA gene	Chr18:3523790-3530420 (+)
DBA/2J	MGP_DBA2J_G0003351	antisense lncRNA gene	Chr18:3259256-3265877 (+)
FVB/NJ	MGP_FVBNJ_G0003369	antisense lncRNA gene	Chr18:3259577-3266414 (+)
LP/J	MGP_LPJ_G0003423	antisense lncRNA gene	Chr18:3394007-3400636 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003357	antisense lncRNA gene	Chr18:3616468-3624129 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003538	antisense lncRNA gene	Chr18:3331462-3338274 (+)
PWK/PhJ	MGP_PWKPhJ_G0003267	antisense lncRNA gene	Chr18:3294889-3301876 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003211	antisense lncRNA gene	Chr18:3607094-3615598 (+)
WSB/EiJ	MGP_WSBEiJ_G0003344	antisense lncRNA gene	Chr18:3359075-3365900 (+)

Homology

• Gene Tree
  Gm28529
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  12
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000101320 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101320	Ensembl Gene Model | MGI Sequence Detail	6820	C57BL/6J
transcript	ENSMUST00000189675	Ensembl | MGI Sequence Detail	670	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm28529:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149961	Chr18:6490134-6490165 (+)	7 bp