Gm28505 Gene Detail

Summary

• Symbol
  Gm28505
• Name
  predicted gene 28505

• Feature Type
  lncRNA gene
• IDs
  MGI:5579211
  NCBI Gene: 105246194
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:11301137-11308355 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579211	lncRNA gene	Chr17:11301137-11308355 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003370	antisense lncRNA gene	Chr17:8691696-8698916 (-)
A/J	MGP_AJ_G0003346	antisense lncRNA gene	Chr17:8581686-8588906 (-)
AKR/J	MGP_AKRJ_G0003329	antisense lncRNA gene	Chr17:8368432-8376802 (-)
BALB/cJ	MGP_BALBcJ_G0003335	antisense lncRNA gene	Chr17:8356598-8363805 (-)
C3H/HeJ	MGP_C3HHeJ_G0003288	antisense lncRNA gene	Chr17:8617403-8624612 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003476	antisense lncRNA gene	Chr17:9017899-9025117 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002992	antisense lncRNA gene	Chr17:5837183-5844587 (+)
CAST/EiJ	MGP_CASTEiJ_G0003251	antisense lncRNA gene	Chr17:8654721-8661981 (-)
CBA/J	MGP_CBAJ_G0003284	antisense lncRNA gene	Chr17:9382229-9391019 (-)
DBA/2J	MGP_DBA2J_G0003290	antisense lncRNA gene	Chr17:8219165-8226803 (-)
FVB/NJ	MGP_FVBNJ_G0003308	antisense lncRNA gene	Chr17:8161982-8169200 (-)
LP/J	MGP_LPJ_G0003363	antisense lncRNA gene	Chr17:8489677-8496906 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003297	antisense lncRNA gene	Chr17:9048529-9055751 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003479	antisense lncRNA gene	Chr17:8635404-8642625 (-)
PWK/PhJ	MGP_PWKPhJ_G0003211	antisense lncRNA gene	Chr17:7902481-7910098 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003155	antisense lncRNA gene	Chr17:7985534-7994569 (-)
WSB/EiJ	MGP_WSBEiJ_G0003285	antisense lncRNA gene	Chr17:8960014-8967223 (-)

Homology

• Gene Tree
  Gm28505
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000100402 (Evidence)
• NCBI Gene
  105246194

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100402	Ensembl Gene Model | MGI Sequence Detail	7219	C57BL/6J
transcript	ENSMUST00000190466	Ensembl | MGI Sequence Detail	680	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;