Gm28417 Gene Detail

Summary

• Symbol
  Gm28417
• Name
  predicted gene 28417

• Feature Type
  lncRNA gene
• IDs
  MGI:5579123
  NCBI Gene: 118567734
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:34508941-34510579 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579123	lncRNA gene	Chr1:34497795-34512319 (-)
129S1/SvImJ	ENSMUSG00200005030	lncRNA gene	Chr1:32045066-32049427 (-)
A/J	ENSMUSG00195045457	lncRNA gene	Chr1:31721326-31725685 (-)
AKR/J	ENSMUSG00220009978	lncRNA gene	Chr1:31747433-31751593 (-)
BALB/cJ	ENSMUSG00180012326	lncRNA gene	Chr1:31833463-31837825 (-)
C3H/HeJ	ENSMUSG00175001573	lncRNA gene	Chr1:31725623-31729982 (-)
C57BL/6NJ	ENSMUSG00215032272	lncRNA gene	Chr1:31810465-31814825 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013231	unclassified non-coding RNA gene	Chr1:29233661-29236801 (-)
CAST/EiJ	ENSTCUG00005003340	lncRNA gene	Chr1:31872447-31876632 (-)
CBA/J	ENSMUSG00210006801	lncRNA gene	Chr1:31571350-31575510 (-)
DBA/2J	ENSMUSG00185010885	lncRNA gene	Chr1:32635588-32639949 (-)
FVB/NJ	ENSMUSG00205040539	lncRNA gene	Chr1:31751093-31755456 (-)
JF1/MsJ	ENSUMUG00000025409	lncRNA gene	Chr1:31849031-31853309 (-)
LP/J	ENSMUSG00230026086	lncRNA gene	Chr1:32687216-32691578 (-)
NOD/ShiLtJ	ENSMUSG00190042162	lncRNA gene	Chr1:31730960-31735153 (-)
NZO/HlLtJ	ENSMUSG00225014294	lncRNA gene	Chr1:35955897-35960257 (-)
PWK/PhJ	ENSLUMG00010038051	lncRNA gene	Chr1:31415073-31419337 (-)
SPRET/EiJ	ENSMSPG00010031820	lncRNA gene	Chr1:32821870-32826108 (-)
WSB/EiJ	ENSIUOG00005040162	lncRNA gene	Chr1:31734835-31739200 (-)

Homology

• Gene Tree
  Gm28417
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28417
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000100280 (Evidence)
• NCBI Gene
  118567734

Representative Sequences			Length	Strain/Species
genomic	118567734	NCBI Gene Model | MGI Sequence Detail	1639	C57BL/6J
transcript	XR_004935995	RefSeq | MGI Sequence Detail	1368	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm28417:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11220	Chr1:34512239-34512262 (-)	-1,672 bp
Tssr11219	Chr1:34512128-34512139 (-)	-1,555 bp