Gm28380 Gene Detail

Summary

• Symbol
  Gm28380
• Name
  predicted gene 28380

• Feature Type
  lncRNA gene
• IDs
  MGI:5579086
  NCBI Gene: 102639494
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:91538933-91552235 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  412 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579086	lncRNA gene	Chr1:91538873-91554600 (+)
129S1/SvImJ	ENSMUSG00200038565	lncRNA gene	Chr1:88758411-88771499 (+)
A/J	ENSMUSG00195034880	lncRNA gene	Chr1:88317135-88330225 (+)
AKR/J	ENSMUSG00220046573	lncRNA gene	Chr1:88467549-88480637 (+)
BALB/cJ	ENSMUSG00180017690	lncRNA gene	Chr1:88631409-88643329 (+)
C3H/HeJ	ENSMUSG00175001598	lncRNA gene	Chr1:88502972-88516060 (+)
C57BL/6NJ	ENSMUSG00215034032	lncRNA gene	Chr1:88439719-88452813 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004452	lincRNA gene	Chr1:84056690-84068923 (+)
CAST/EiJ	ENSTCUG00005007677	lncRNA gene	Chr1:88065410-88077666 (+)
CBA/J	ENSMUSG00210012430	lncRNA gene	Chr1:88348233-88361321 (+)
DBA/2J	ENSMUSG00185014231	lncRNA gene	Chr1:92817972-92829893 (+)
FVB/NJ	ENSMUSG00205042920	lncRNA gene	Chr1:87755786-87768878 (+)
JF1/MsJ	ENSUMUG00000024498	lncRNA gene	Chr1:91557361-91569403 (+)
LP/J	ENSMUSG00230023680	lncRNA gene	Chr1:92094560-92107652 (+)
NOD/ShiLtJ	ENSMUSG00190033446	lncRNA gene	Chr1:88399142-88411061 (+)
NZO/HlLtJ	ENSMUSG00225004120	lncRNA gene	Chr1:95995943-96009035 (+)
PWK/PhJ	ENSLUMG00010048491	lncRNA gene	Chr1:87949047-87961112 (+)
SPRET/EiJ	ENSMSPG00010047228	lncRNA gene	Chr1:89983744-89995847 (+)
WSB/EiJ	ENSIUOG00005042837	lncRNA gene	Chr1:88062220-88074143 (+)

Homology

• Gene Tree
  Gm28380
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28380
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000101705 (Evidence)
• NCBI Gene
  102639494

Representative Sequences			Length	Strain/Species
genomic	102639494	NCBI Gene Model | MGI Sequence Detail	13303	C57BL/6J
transcript	XR_001779198	RefSeq | MGI Sequence Detail	490	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28380:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158	Chr1:91539078-91539089 (+)	151 bp