Gm28370 Gene Detail

Summary

• Symbol
  Gm28370
• Name
  predicted gene 28370

• Feature Type
  lncRNA gene
• IDs
  MGI:5579076
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:81538973-81543789 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579076	lncRNA gene	Chr12:81538973-81543789 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003147	antisense lncRNA gene	Chr12:81951889-81956647 (+)
A/J	MGP_AJ_G0003124	antisense lncRNA gene	Chr12:78961455-78971003 (+)
AKR/J	MGP_AKRJ_G0003104	antisense lncRNA gene	Chr12:81116836-81121560 (+)
BALB/cJ	MGP_BALBcJ_G0003111	antisense lncRNA gene	Chr12:79189474-79201581 (+)
C3H/HeJ	MGP_C3HHeJ_G0003067	antisense lncRNA gene	Chr12:81573508-81578877 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003254	antisense lncRNA gene	Chr12:84351574-84356098 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002788	antisense lncRNA gene	Chr12:75922852-75927665 (+)
CAST/EiJ	MGP_CASTEiJ_G0003036	antisense lncRNA gene	Chr12:76450903-76460196 (+)
CBA/J	MGP_CBAJ_G0003064	antisense lncRNA gene	Chr12:87617256-87622014 (+)
DBA/2J	MGP_DBA2J_G0003069	antisense lncRNA gene	Chr12:78542471-78552941 (+)
FVB/NJ	MGP_FVBNJ_G0003089	antisense lncRNA gene	Chr12:77401030-77405508 (+)
LP/J	MGP_LPJ_G0003144	antisense lncRNA gene	Chr12:81865475-81871521 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003078	antisense lncRNA gene	Chr12:90619386-90629404 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003258	antisense lncRNA gene	Chr12:80645739-80650313 (+)
PWK/PhJ	MGP_PWKPhJ_G0002994	antisense lncRNA gene	Chr12:72954726-72959625 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002938	antisense lncRNA gene	Chr12:75144885-75151034 (+)
WSB/EiJ	MGP_WSBEiJ_G0003067	antisense lncRNA gene	Chr12:81288599-81300256 (+)

Homology

• Gene Tree
  Gm28370
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28370
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099478 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099478	Ensembl Gene Model | MGI Sequence Detail	4817	C57BL/6J
transcript	ENSMUST00000185303	Ensembl | MGI Sequence Detail	3375	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;