Gm28364 Gene Detail

Summary

• Symbol
  Gm28364
• Name
  predicted gene 28364

• Feature Type
  lncRNA gene
• IDs
  MGI:5579070
  NCBI Gene: 108167628
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:74320320-74321873 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579070	lncRNA gene	Chr1:74319961-74321873 (+)
129S1/SvImJ	ENSMUSG00200035182	lncRNA gene	Chr1:71983248-71983953 (+)
A/J	ENSMUSG00195010626	lncRNA gene	Chr1:71408116-71408821 (+)
AKR/J	ENSMUSG00220010459	lncRNA gene	Chr1:71553933-71554638 (+)
BALB/cJ	ENSMUSG00180021591	lncRNA gene	Chr1:71667000-71667705 (+)
C3H/HeJ	ENSMUSG00175017974	lncRNA gene	Chr1:71808510-71809215 (+)
C57BL/6NJ	ENSMUSG00215027040	lncRNA gene	Chr1:71712302-71713007 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002353	antisense lncRNA gene	Chr1:67833161-67833868 (+)
CAST/EiJ	ENSTCUG00005029461	lncRNA gene	Chr1:71435037-71435742 (+)
CBA/J	ENSMUSG00210041579	lncRNA gene	Chr1:71492756-71493461 (+)
DBA/2J	ENSMUSG00185032287	lncRNA gene	Chr1:72586592-72587297 (+)
FVB/NJ	ENSMUSG00205038002	lncRNA gene	Chr1:71161909-71162614 (+)
JF1/MsJ	ENSUMUG00000005919	lncRNA gene	Chr1:71483527-71484225 (+)
LP/J	ENSMUSG00230014014	lncRNA gene	Chr1:72576431-72577136 (+)
NOD/ShiLtJ	ENSMUSG00190037985	lncRNA gene	Chr1:71719072-71719777 (+)
NZO/HlLtJ	ENSMUSG00225040741	lncRNA gene	Chr1:75791548-75792253 (+)
PWK/PhJ	ENSLUMG00010013829	lncRNA gene	Chr1:71061336-71062034 (+)
SPRET/EiJ	ENSMSPG00010021173	lncRNA gene	Chr1:73163000-73163705 (+)
WSB/EiJ	ENSIUOG00005013777	lncRNA gene	Chr1:71340638-71341343 (+)

Homology

• Gene Tree
  Gm28364
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28364
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000101503 (Evidence)
• NCBI Gene
  108167628

Representative Sequences			Length	Strain/Species
genomic	108167628	NCBI Gene Model | MGI Sequence Detail	1554	C57BL/6J
transcript	NR_168296	RefSeq | MGI Sequence Detail	1182	ZRU/MplStud

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28364:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7371	Chr1:74320315-74320335 (+)	5 bp
Tssr7372	Chr1:74320341-74320361 (+)	31 bp
Tssr7373	Chr1:74320373-74320382 (+)	58 bp
Tssr7374	Chr1:74320384-74320387 (+)	66 bp