Gm28347 Gene Detail

Summary

• Symbol
  Gm28347
• Name
  predicted gene 28347

• Feature Type
  lncRNA gene
• IDs
  MGI:5579053
  NCBI Gene: 102632179
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:11012779-11013198 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579053	lncRNA gene	Chr19:11012474-11017087 (-)
129S1/SvImJ	ENSMUSG00200053316	lncRNA gene	Chr19:7691852-7694070 (-)
A/J	ENSMUSG00195053416	lncRNA gene	Chr19:7904840-7907058 (-)
AKR/J	ENSMUSG00220051373	lncRNA gene	Chr19:7812743-7814961 (-)
BALB/cJ	ENSMUSG00180051502	lncRNA gene	Chr19:8266593-8268811 (-)
C3H/HeJ	ENSMUSG00175014950	lncRNA gene	Chr19:7537602-7539819 (-)
C57BL/6NJ	ENSMUSG00215048736	lncRNA gene	Chr19:7609167-7611386 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005284	lincRNA gene	Chr19:8273631-8307699 (-)
CAST/EiJ	ENSTCUG00005043889	lncRNA gene	Chr19:7417763-7419935 (-)
CBA/J	ENSMUSG00210050475	lncRNA gene	Chr19:7736167-7738384 (-)
DBA/2J	ENSMUSG00185053230	lncRNA gene	Chr19:8145895-8148112 (-)
FVB/NJ	ENSMUSG00205053458	lncRNA gene	Chr19:7627219-7629437 (-)
JF1/MsJ	ENSUMUG00000056968	lncRNA gene	Chr19:8265892-8268064 (-)
LP/J	ENSMUSG00230054275	lncRNA gene	Chr19:9066479-9068697 (-)
NOD/ShiLtJ	ENSMUSG00190052265	lncRNA gene	Chr19:7364409-7366627 (-)
NZO/HlLtJ	ENSMUSG00225047376	lncRNA gene	Chr19:12775322-12777540 (-)
PWK/PhJ	ENSLUMG00010008578	lncRNA gene	Chr19:7663754-7665925 (-)
SPRET/EiJ	ENSMSPG00010050989	lncRNA gene	Chr19:7495552-7497725 (-)
WSB/EiJ	ENSIUOG00005051747	lncRNA gene	Chr19:7265819-7267992 (-)

Homology

• Gene Tree
  Gm28347
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm28347
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000101264 (Evidence)
• NCBI Gene
  102632179

Representative Sequences			Length	Strain/Species
genomic	102632179	NCBI Gene Model | MGI Sequence Detail	420	C57BL/6J
transcript	XR_386556	RefSeq | MGI Sequence Detail	284	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360

TSS for Gm28347:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158272	Chr19:11015025-11015031 (-)	-1,830 bp