Gm28209 Gene Detail

Summary

• Symbol
  Gm28209
• Name
  predicted gene 28209

• Feature Type
  lncRNA gene
• IDs
  MGI:5578915
  NCBI Gene: 102636940
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:119830320-119846243 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  500 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578915	lncRNA gene	Chr1:119764899-119855582 (+)
129S1/SvImJ	ENSMUSG00200001832	lncRNA gene	Chr1:117307436-117311197 (+)
A/J	ENSMUSG00195004566	lncRNA gene	Chr1:116548225-116551986 (+)
AKR/J	ENSMUSG00220025437	lncRNA gene	Chr1:116363950-116367711 (+)
BALB/cJ	ENSMUSG00180012611	lncRNA gene	Chr1:116957874-116961597 (+)
C3H/HeJ	ENSMUSG00175020139	lncRNA gene	Chr1:116779075-116782838 (+)
C57BL/6NJ	ENSMUSG00215012616	lncRNA gene	Chr1:116738027-116741796 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004478	lincRNA gene	Chr1:111930431-111935070 (+)
CAST/EiJ	ENSTCUG00005006611	lncRNA gene	Chr1:115712181-115716146 (+)
CBA/J	ENSMUSG00210001278	lncRNA gene	Chr1:116608714-116612477 (+)
DBA/2J	ENSMUSG00185013757	lncRNA gene	Chr1:121057052-121060815 (+)
FVB/NJ	ENSMUSG00205012376	lncRNA gene	Chr1:116111099-116114820 (+)
JF1/MsJ	ENSUMUG00000030525	lncRNA gene	Chr1:120149395-120153476 (+)
LP/J	ENSMUSG00230009242	lncRNA gene	Chr1:120485244-120489005 (+)
NOD/ShiLtJ	ENSMUSG00190006513	lncRNA gene	Chr1:116593921-116597692 (+)
NZO/HlLtJ	ENSMUSG00225005020	lncRNA gene	Chr1:124279713-124283397 (+)
PWK/PhJ	ENSLUMG00010014907	lncRNA gene	Chr1:115735013-115739093 (+)
SPRET/EiJ	ENSMSPG00010017346	lncRNA gene	Chr1:118368293-118372155 (+)
WSB/EiJ	ENSIUOG00005003124	lncRNA gene	Chr1:116460520-116464270 (+)

Homology

• Gene Tree
  Gm28209
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28209
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000101224 (Evidence)
• NCBI Gene
  102636940

Representative Sequences			Length	Strain/Species
genomic	102636940	NCBI Gene Model | MGI Sequence Detail	15924	C57BL/6J
transcript	XR_003948701	RefSeq | MGI Sequence Detail	1912	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28209:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr183	Chr1:119834567-119834572 (+)	4,250 bp