Gm28175 Gene Detail

Summary

• Symbol
  Gm28175
• Name
  predicted gene 28175

• Feature Type
  lncRNA gene
• IDs
  MGI:5578881
  NCBI Gene: 102640173
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:42296970-42349170 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  1466 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578881	lncRNA gene	Chr1:42296970-42426946 (+)
129S1/SvImJ	ENSMUSG00200004805	lncRNA gene	Chr1:39908201-39952914 (+)
A/J	ENSMUSG00195044828	lncRNA gene	Chr1:39625524-39670285 (+)
AKR/J	ENSMUSG00220009811	lncRNA gene	Chr1:39614779-39659517 (+)
BALB/cJ	ENSMUSG00180012707	lncRNA gene	Chr1:39639785-39684465 (+)
C3H/HeJ	ENSMUSG00175001623	lncRNA gene	Chr1:39633359-39678098 (+)
C57BL/6NJ	ENSMUSG00215031127	lncRNA gene	Chr1:39614878-39659543 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004359	lincRNA gene	Chr1:36822497-36822897 (+)
CAST/EiJ	ENSTCUG00005003094	lncRNA gene	Chr1:39694807-39739644 (+)
CBA/J	ENSMUSG00210006078	lncRNA gene	Chr1:39378471-39423143 (+)
DBA/2J	ENSMUSG00185011229	lncRNA gene	Chr1:40479563-40524233 (+)
FVB/NJ	ENSMUSG00205037705	lncRNA gene	Chr1:39578572-39623302 (+)
JF1/MsJ	ENSUMUG00000027747	lncRNA gene	Chr1:39701126-39746040 (+)
LP/J	ENSMUSG00230027263	lncRNA gene	Chr1:40520216-40564985 (+)
NOD/ShiLtJ	ENSMUSG00190043098	lncRNA gene	Chr1:39591995-39636652 (+)
NZO/HlLtJ	ENSMUSG00225000807	lncRNA gene	Chr1:43762105-43806792 (+)
PWK/PhJ	ENSLUMG00010038899	lncRNA gene	Chr1:39222987-39267905 (+)
SPRET/EiJ	ENSMSPG00010030710	lncRNA gene	Chr1:40767478-40812547 (+)
WSB/EiJ	ENSIUOG00005039641	lncRNA gene	Chr1:39534919-39579677 (+)

Homology

• Gene Tree
  Gm28175
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm28175
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  85
• RefSeq
  21

• Ensembl
  ENSMUSG00000101299 (Evidence)
• NCBI Gene
  102640173

Representative Sequences			Length	Strain/Species
genomic	102640173	NCBI Gene Model | MGI Sequence Detail	52201	C57BL/6J
transcript	XR_004936045	RefSeq | MGI Sequence Detail	32061	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm28175:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6506	Chr1:42298963-42298970 (+)	1,997 bp
Tssr6507	Chr1:42301083-42301129 (+)	4,136 bp