Gm28114 Pseudogene Detail

Summary

• Symbol
  Gm28114
• Name
  predicted gene 28114

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5578820
  NCBI Gene: 102637559
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:75220855-75223030 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic

Strain
Comparison

• SNPs within 2kb
  237 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578820	pseudogene	Chr15:75220466-75264729 (-)
129S1/SvImJ	ENSMUSG00200054008	pseudogene	Chr15:72336024-72338199 (-)
A/J	ENSMUSG00195051457	pseudogene	Chr15:72312473-72314648 (-)
AKR/J	ENSMUSG00220053399	pseudogene	Chr15:72321500-72323675 (-)
BALB/cJ	ENSMUSG00180053828	pseudogene	Chr15:72139205-72141380 (-)
C3H/HeJ	ENSMUSG00175053160	pseudogene	Chr15:72501111-72503286 (-)
C57BL/6NJ	ENSMUSG00215053481	pseudogene	Chr15:72227600-72229775 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048822	pseudogene	Chr15:71830468-71832641 (-)
CBA/J	ENSMUSG00210049107	pseudogene	Chr15:72276410-72278585 (-)
DBA/2J	ENSMUSG00185051000	pseudogene	Chr15:72253057-72255232 (-)
FVB/NJ	ENSMUSG00205052368	pseudogene	Chr15:71999319-72001494 (-)
JF1/MsJ	ENSUMUG00000056052	pseudogene	Chr15:71872292-71874474 (-)
LP/J	ENSMUSG00230052911	pseudogene	Chr15:75617084-75619259 (-)
NOD/ShiLtJ	ENSMUSG00190053737	pseudogene	Chr15:72240082-72242265 (-)
NZO/HlLtJ	ENSMUSG00225054010	pseudogene	Chr15:75904942-75907125 (-)
PWK/PhJ	ENSLUMG00010053073	pseudogene	Chr15:72152316-72154484 (-)
SPRET/EiJ	ENSMSPG00010050340	pseudogene	Chr15:73873599-73875796 (-)
WSB/EiJ	ENSIUOG00005050424	pseudogene	Chr15:72289196-72291375 (-)

Homology

• Gene Tree
  Gm28114
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  3
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm28114
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4

• Ensembl
  ENSMUSG00000100375 (Evidence)
• NCBI Gene
  102637559

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100375	Ensembl Gene Model | MGI Sequence Detail	2176	C57BL/6J
transcript	ENSMUST00000187232	Ensembl | MGI Sequence Detail	379	Not Applicable

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:155838 Katayama K, et al., Characterization of the chromosomal inversion associated with the Koa mutation in the mouse revealed the cause of skeletal abnormalities. BMC Genet. 2009;10:60

TSS for Gm28114:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134843	Chr15:75223972-75223975 (-)	-944 bp