Gm28068 Gene Detail

Summary

• Symbol
  Gm28068
• Name
  predicted gene 28068

• Feature Type
  lncRNA gene
• IDs
  MGI:5578774
  NCBI Gene: 102636152
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:74860484-74915705 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic

Strain
Comparison

• SNPs within 2kb
  1515 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578774	lncRNA gene	Chr15:74838780-74915734 (+)
129S1/SvImJ	ENSMUSG00200053689	lncRNA gene	Chr15:71985103-72005464 (+)
A/J	no annotation
AKR/J	ENSMUSG00220053341	lncRNA gene	Chr15:71973540-71993901 (+)
BALB/cJ	ENSMUSG00180054098	lncRNA gene	Chr15:71817844-71838280 (+)
C3H/HeJ	ENSMUSG00175053210	lncRNA gene	Chr15:72179764-72200201 (+)
C57BL/6NJ	ENSMUSG00215053438	lncRNA gene	Chr15:71882608-71902967 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048454	lncRNA gene	Chr15:71474496-71525912 (+)
CBA/J	ENSMUSG00210049891	lncRNA gene	Chr15:71955094-71975535 (+)
DBA/2J	ENSMUSG00185051633	lncRNA gene	Chr15:71908116-71928469 (+)
FVB/NJ	ENSMUSG00205052630	lncRNA gene	Chr15:71653991-71674346 (+)
JF1/MsJ	ENSUMUG00000056152	lncRNA gene	Chr15:71540447-71560782 (+)
LP/J	ENSMUSG00230052828	lncRNA gene	Chr15:75272173-75292532 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225054048	lncRNA gene	Chr15:75538429-75558850 (+)
PWK/PhJ	ENSLUMG00010053183	lncRNA gene	Chr15:71825103-71845539 (+)
SPRET/EiJ	ENSMSPG00010051600	lncRNA gene	Chr15:73603291-73603394 (-)
WSB/EiJ	ENSIUOG00005049774	lncRNA gene	Chr15:72002089-72018068 (+)

Homology

• Gene Tree
  Gm28068
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  3
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm28068
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  5

• Ensembl
  ENSMUSG00000100287 (Evidence)
• NCBI Gene
  102636152

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100287	Ensembl Gene Model | MGI Sequence Detail	55222	C57BL/6J
transcript	ENSMUST00000190861	Ensembl | MGI Sequence Detail	3503	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:155838 Katayama K, et al., Characterization of the chromosomal inversion associated with the Koa mutation in the mouse revealed the cause of skeletal abnormalities. BMC Genet. 2009;10:60

TSS for Gm28068:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131647	Chr15:74861431-74861443 (+)	953 bp
Tssr131648	Chr15:74861461-74861472 (+)	983 bp
Tssr131649	Chr15:74867240-74867246 (+)	6,759 bp