Mannr Gene Detail

Summary

• Symbol
  Mannr
• Name
  Mecom adjacent non-protein coding RNA
• Synonyms
  Manr

• Feature Type
  lncRNA gene
• IDs
  MGI:5564803
  NCBI Gene: 102636083
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:29945166-29978340 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  956 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5564803	lncRNA gene	Chr3:29945110-29978491 (+)
129S1/SvImJ	ENSMUSG00200025026	lncRNA gene	Chr3:26648737-26681940 (+)
A/J	ENSMUSG00195022014	lncRNA gene	Chr3:26660366-26693542 (+)
AKR/J	ENSMUSG00220008741	lncRNA gene	Chr3:26697892-26731173 (+)
BALB/cJ	ENSMUSG00180034356	lncRNA gene	Chr3:26792799-26826007 (+)
C3H/HeJ	ENSMUSG00175028458	lncRNA gene	Chr3:26653529-26686708 (+)
C57BL/6NJ	ENSMUSG00215017964	lncRNA gene	Chr3:27042392-27075606 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026416	lncRNA gene	Chr3:26602521-26635915 (+)
CBA/J	ENSMUSG00210038123	lncRNA gene	Chr3:26740208-26773370 (+)
DBA/2J	ENSMUSG00185009681	lncRNA gene	Chr3:27758572-27791761 (-)
FVB/NJ	ENSMUSG00205009109	lncRNA gene	Chr3:26200472-26230785 (+)
JF1/MsJ	ENSUMUG00000005389	lncRNA gene	Chr3:26464057-26489615 (+)
LP/J	ENSMUSG00230002369	lncRNA gene	Chr3:28893979-28927182 (+)
NOD/ShiLtJ	ENSMUSG00190037621	lncRNA gene	Chr3:26950054-26983329 (+)
NZO/HlLtJ	ENSMUSG00225007545	lncRNA gene	Chr3:31519718-31552974 (+)
PWK/PhJ	ENSLUMG00010036905	lncRNA gene	Chr3:26467918-26493483 (+)
SPRET/EiJ	ENSMSPG00010025835	lncRNA gene	Chr3:26786124-26811394 (+)
WSB/EiJ	ENSIUOG00005035897	lncRNA gene	Chr3:26995800-27029075 (+)

Homology

• Gene Tree
  Mannr
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  5 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  1 involving Mannr
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a null allele are viable.

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  598
• Tissues
  1
• cDNA Data
  1
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000102590 (Evidence)
• NCBI Gene
  102636083

Representative Sequences			Length	Strain/Species
genomic	102636083	NCBI Gene Model | MGI Sequence Detail	33175	C57BL/6J
transcript	NR_110437	RefSeq | MGI Sequence Detail	1435	ZRU/MplStud

Protein
Information

• EC
  102636083

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Developmental Gene Expression 2

  Diseases 1

  Gene Ontology 1

  Phenotypes 5
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Mannr:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28677	Chr3:29945157-29945180 (+)	3 bp